PDB entry 2cjr

View 2cjr on RCSB PDB site
Description: crystal structure of oligomerization domain of sars coronavirus nucleocapsid protein.
Class: viral protein
Keywords: oligomerization domain, nucleocapsid protein, sars, coronavirus, viral protein
Deposited on 2006-04-06, released 2007-04-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.256
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nucleocapsid protein
    Species: SARS CORONAVIRUS [TaxId:229993]
    Database cross-references and differences (RAF-indexed):
    • PDB 2CJR
    • Uniprot P59595 (Start-127)
    Domains in SCOPe 2.08: d2cjra1
  • Chain 'B':
    Compound: nucleocapsid protein
    Species: SARS CORONAVIRUS [TaxId:229993]
    Database cross-references and differences (RAF-indexed):
    • PDB 2CJR
    • Uniprot P59595 (Start-127)
    Domains in SCOPe 2.08: d2cjrb_
  • Chain 'C':
    Compound: nucleocapsid protein
    Species: SARS CORONAVIRUS [TaxId:229993]
    Database cross-references and differences (RAF-indexed):
    • PDB 2CJR
    • Uniprot P59595 (Start-127)
    Domains in SCOPe 2.08: d2cjrc_
  • Chain 'D':
    Compound: nucleocapsid protein
    Species: SARS CORONAVIRUS [TaxId:229993]
    Database cross-references and differences (RAF-indexed):
    • PDB 2CJR
    • Uniprot P59595 (Start-127)
    Domains in SCOPe 2.08: d2cjrd_
  • Chain 'E':
    Compound: nucleocapsid protein
    Species: SARS CORONAVIRUS [TaxId:229993]
    Database cross-references and differences (RAF-indexed):
    • PDB 2CJR
    • Uniprot P59595 (Start-127)
    Domains in SCOPe 2.08: d2cjre_
  • Chain 'F':
    Compound: nucleocapsid protein
    Species: SARS CORONAVIRUS [TaxId:229993]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2cjrf_
  • Chain 'G':
    Compound: nucleocapsid protein
    Species: SARS CORONAVIRUS [TaxId:229993]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2cjrg_
  • Chain 'H':
    Compound: nucleocapsid protein
    Species: SARS CORONAVIRUS [TaxId:229993]
    Database cross-references and differences (RAF-indexed):
    • PDB 2CJR
    • Uniprot P59595 (Start-127)
    Domains in SCOPe 2.08: d2cjrh_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2cjrA (A:)
mhhhhhhamgtkksaaeaskkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgt
dykhwpqiaqfapsasaffgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkh
idayktfp

    Sequence, based on observed residues (ATOM records): (download) 
    >2cjrA (A:)
saaeaskkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgtdykhwpqiaqfap
sasaffgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkhidayktfp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2cjrB (B:)
mhhhhhhamgtkksaaeaskkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgt
dykhwpqiaqfapsasaffgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkh
idayktfp

    Sequence, based on observed residues (ATOM records): (download) 
    >2cjrB (B:)
aeaskkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgtdykhwpqiaqfapsa
saffgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkhidayktfp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2cjrC (C:)
mhhhhhhamgtkksaaeaskkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgt
dykhwpqiaqfapsasaffgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkh
idayktfp

    Sequence, based on observed residues (ATOM records): (download) 
    >2cjrC (C:)
aeaskkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgtdykhwpqiaqfapsa
saffgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkhidayktfp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2cjrD (D:)
mhhhhhhamgtkksaaeaskkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgt
dykhwpqiaqfapsasaffgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkh
idayktfp

    Sequence, based on observed residues (ATOM records): (download) 
    >2cjrD (D:)
saaeaskkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgtdykhwpqiaqfap
sasaffgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkhidayktfp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2cjrE (E:)
mhhhhhhamgtkksaaeaskkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgt
dykhwpqiaqfapsasaffgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkh
idayktfp

    Sequence, based on observed residues (ATOM records): (download) 
    >2cjrE (E:)
skkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgtdykhwpqiaqfapsasaf
fgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkhidayktfp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2cjrF (F:)
mhhhhhhamgtkksaaeaskkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgt
dykhwpqiaqfapsasaffgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkh
idayktfp

    Sequence, based on observed residues (ATOM records): (download) 
    >2cjrF (F:)
aaeaskkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgtdykhwpqiaqfaps
asaffgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkhidaykt

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2cjrG (G:)
mhhhhhhamgtkksaaeaskkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgt
dykhwpqiaqfapsasaffgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkh
idayktfp

    Sequence, based on observed residues (ATOM records): (download) 
    >2cjrG (G:)
askkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgtdykhwpqiaqfapsasa
ffgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkhidaykt

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2cjrH (H:)
mhhhhhhamgtkksaaeaskkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgt
dykhwpqiaqfapsasaffgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkh
idayktfp

    Sequence, based on observed residues (ATOM records): (download) 
    >2cjrH (H:)
skkprqkrtatkqynvtqafgrrgpeqtqgnfgdqdlirqgtdykhwpqiaqfapsasaf
fgmsrigmevtpsgtwltyhgaiklddkdpqfkdnvillnkhidayktfp