PDB entry 2cdy
View 2cdy on RCSB PDB site
Description: manganese superoxide dismutase (mn-sod) from deinococcus radiodurans
Class: oxidoreductase
Keywords: manganese superoxide dismutase, deinococcus radiodurans, radiation resistance, oxidoreductase
Deposited on
2006-01-31, released
2006-02-13
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.176
AEROSPACI score: 0.47
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Superoxide dismutase [Mn]
Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
Database cross-references and differences (RAF-indexed):
- PDB 2CDY (Start-20)
- Uniprot Q9RUV2 (21-230)
Domains in SCOPe 2.04: d2cdya1, d2cdya2 - Chain 'B':
Compound: Superoxide dismutase [Mn]
Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
Database cross-references and differences (RAF-indexed):
- PDB 2CDY (Start-20)
- Uniprot Q9RUV2 (21-230)
Domains in SCOPe 2.04: d2cdyb1, d2cdyb2 - Chain 'C':
Compound: Superoxide dismutase [Mn]
Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
Database cross-references and differences (RAF-indexed):
- PDB 2CDY (Start-20)
- Uniprot Q9RUV2 (21-230)
Domains in SCOPe 2.04: d2cdyc1, d2cdyc2 - Chain 'D':
Compound: Superoxide dismutase [Mn]
Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
Database cross-references and differences (RAF-indexed):
- PDB 2CDY (Start-20)
- Uniprot Q9RUV2 (21-230)
Domains in SCOPe 2.04: d2cdyd1, d2cdyd2 - Heterogens: MN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2cdyA (A:)
msyyhhhhhhlestslykkalaytlpqlpyaydalephidartmeihhtkhhqtyvdnan
kalegtefadlpveqliqqldrvpadkkgalrnnagghanhsmfwqimgqgqgqnganqp
sgelldainsafgsfdafkqkfedaaktrfgsgwawlvvkdgkldvvstanqdnplmgea
iagvsgtpilgvdvwehayylnyqnrrpdylaafwnvvnwdevskryaaak
Sequence, based on observed residues (ATOM records): (download)
>2cdyA (A:)
alaytlpqlpyaydalephidartmeihhtkhhqtyvdnankalegtefadlpveqliqq
ldrvpadkkgalrnnagghanhsmfwqimgqgqanqpsgelldainsafgsfdafkqkfe
daaktrfgsgwawlvvkdgkldvvstanqdnplmgeaiagvsgtpilgvdvwehayylny
qnrrpdylaafwnvvnwdevskryaaak
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2cdyB (B:)
msyyhhhhhhlestslykkalaytlpqlpyaydalephidartmeihhtkhhqtyvdnan
kalegtefadlpveqliqqldrvpadkkgalrnnagghanhsmfwqimgqgqgqnganqp
sgelldainsafgsfdafkqkfedaaktrfgsgwawlvvkdgkldvvstanqdnplmgea
iagvsgtpilgvdvwehayylnyqnrrpdylaafwnvvnwdevskryaaak
Sequence, based on observed residues (ATOM records): (download)
>2cdyB (B:)
alaytlpqlpyaydalephidartmeihhtkhhqtyvdnankaleefadlpveqliqqld
rvpadkkgalrnnagghanhsmfwqimgqgqnqpsgelldainsafgsfdafkqkfedaa
ktrfgsgwawlvvkdgkldvvstanqdnplmgeaiagvsgtpilgvdvwehayylnyqnr
rpdylaafwnvvnwdevskryaaak
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2cdyC (C:)
msyyhhhhhhlestslykkalaytlpqlpyaydalephidartmeihhtkhhqtyvdnan
kalegtefadlpveqliqqldrvpadkkgalrnnagghanhsmfwqimgqgqgqnganqp
sgelldainsafgsfdafkqkfedaaktrfgsgwawlvvkdgkldvvstanqdnplmgea
iagvsgtpilgvdvwehayylnyqnrrpdylaafwnvvnwdevskryaaak
Sequence, based on observed residues (ATOM records): (download)
>2cdyC (C:)
laytlpqlpyaydalephidartmeihhtkhhqtyvdnankalegtefadlpveqliqql
drvpadkkgalrnnagghanhsmfwqimgqgqnganqpsgelldainsafgsfdafkqkf
edaaktrfgsgwawlvvkdgkldvvstanqdnplmgeaiagvsgtpilgvdvwehayyln
yqnrrpdylaafwnvvnwdevskryaaak
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2cdyD (D:)
msyyhhhhhhlestslykkalaytlpqlpyaydalephidartmeihhtkhhqtyvdnan
kalegtefadlpveqliqqldrvpadkkgalrnnagghanhsmfwqimgqgqgqnganqp
sgelldainsafgsfdafkqkfedaaktrfgsgwawlvvkdgkldvvstanqdnplmgea
iagvsgtpilgvdvwehayylnyqnrrpdylaafwnvvnwdevskryaaak
Sequence, based on observed residues (ATOM records): (download)
>2cdyD (D:)
laytlpqlpyaydalephidartmeihhtkhhqtyvdnankalegtefadlpveqliqql
drvpadkkgalrnnagghanhsmfwqimgqgqanqpsgelldainsafgsfdafkqkfed
aaktrfgsgwawlvvkdgkldvvstanqdnplmgeaiagvsgtpilgvdvwehayylnyq
nrrpdylaafwnvvnwdevskryaaak