PDB entry 2ccd

View 2ccd on RCSB PDB site
Description: crystal structure of the catalase-peroxidase (katg) and s315t mutant from mycobacterium tuberculosis
Class: oxidoreductase
Keywords: catalase-peroxidase, katg, heme, peroxidase, oxidoreductase, hydrogen peroxide, iron, metal-binding, organic radical
Deposited on 2006-01-16, released 2006-01-19
The last revision prior to the SCOP 1.73 freeze date was dated 2006-04-05, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.23231
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: peroxidase/catalase t
    Species: MYCOBACTERIUM TUBERCULOSIS
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q08129 (Start-739)
      • engineered mutation (314)
    Domains in SCOP 1.73: d2ccda1, d2ccda2
  • Chain 'B':
    Compound: peroxidase/catalase t
    Species: MYCOBACTERIUM TUBERCULOSIS
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q08129 (Start-739)
      • engineered mutation (314)
    Domains in SCOP 1.73: d2ccdb1, d2ccdb2
  • Heterogens: HEM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ccdA (A:)
mpeqhppitetttgaasngcpvvghmkypvegggnqdwwpnrlnlkvlhqnpavadpmga
afdyaaevatidvdaltrdieevmttsqpwwpadyghygplfirmawhaagtyrihdgrg
gagggmqrfaplnswpdnasldkarrllwpvkkkygkklswadlivfagncalesmgfkt
fgfgfgrvdqwepdevywgkeatwlgderysgkrdlenplaavqmgliyvnpegpngnpd
pmaaavdiretfrrmamndvetaalivgghtfgkthgagpadlvgpepeaapleqmglgw
kssygtgtgkdaittgievvwtntptkwdnsfleilygyeweltkspagawqytakdgag
agtipdpfggpgrsptmlatdlslrvdpiyeritrrwlehpeeladefakawyklihrdm
gpvarylgplvpkqtllwqdpvpavshdlvgeaeiaslksqirasgltvsqlvstawaaa
ssfrgsdkrgganggrirlqpqvgwevndpdgdlrkvirtleeiqesfnsaapgnikvsf
adlvvlggcaaiekaakaaghnitvpftpgrtdasqeqtdvesfavlepkadgfrnylgk
gnplpaeymlldkanlltlsapemtvlvgglrvlganykrlplgvfteasesltndffvn
lldmgitwepspaddgtyqgkdgsgkvkwtgsrvdlvfgsnselralvevygaddaqpkf
vqdfvaawdkvmnldrfdvr

    Sequence, based on observed residues (ATOM records): (download) 
    >2ccdA (A:)
mkypvegggnqdwwpnrlnlkvlhqnpavadpmgaafdyaaevatidvdaltrdieevmt
tsqpwwpadyghygplfirmawhaagtyrihdgrggagggmqrfaplnswpdnasldkar
rllwpvkkkygkklswadlivfagncalesmgfktfgfgfgrvdqwepdevywgkeatwl
gderysgkrdlenplaavqmgliyvnpegpngnpdpmaaavdiretfrrmamndvetaal
ivgghtfgkthgagpadlvgpepeaapleqmglgwkssygtgtgkdaittgievvwtntp
tkwdnsfleilygyeweltkspagawqytakdgagagtipdpfggpgrsptmlatdlslr
vdpiyeritrrwlehpeeladefakawyklihrdmgpvarylgplvpkqtllwqdpvpav
shdlvgeaeiaslksqirasgltvsqlvstawaaassfrgsdkrgganggrirlqpqvgw
evndpdgdlrkvirtleeiqesfnsaapgnikvsfadlvvlggcaaiekaakaaghnitv
pftpgrtdasqeqtdvesfavlepkadgfrnylgkgnplpaeymlldkanlltlsapemt
vlvgglrvlganykrlplgvfteasesltndffvnlldmgitwepspaddgtyqgkdgsg
kvkwtgsrvdlvfgsnselralvevygaddaqpkfvqdfvaawdkvmnldrfdvr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ccdB (B:)
mpeqhppitetttgaasngcpvvghmkypvegggnqdwwpnrlnlkvlhqnpavadpmga
afdyaaevatidvdaltrdieevmttsqpwwpadyghygplfirmawhaagtyrihdgrg
gagggmqrfaplnswpdnasldkarrllwpvkkkygkklswadlivfagncalesmgfkt
fgfgfgrvdqwepdevywgkeatwlgderysgkrdlenplaavqmgliyvnpegpngnpd
pmaaavdiretfrrmamndvetaalivgghtfgkthgagpadlvgpepeaapleqmglgw
kssygtgtgkdaittgievvwtntptkwdnsfleilygyeweltkspagawqytakdgag
agtipdpfggpgrsptmlatdlslrvdpiyeritrrwlehpeeladefakawyklihrdm
gpvarylgplvpkqtllwqdpvpavshdlvgeaeiaslksqirasgltvsqlvstawaaa
ssfrgsdkrgganggrirlqpqvgwevndpdgdlrkvirtleeiqesfnsaapgnikvsf
adlvvlggcaaiekaakaaghnitvpftpgrtdasqeqtdvesfavlepkadgfrnylgk
gnplpaeymlldkanlltlsapemtvlvgglrvlganykrlplgvfteasesltndffvn
lldmgitwepspaddgtyqgkdgsgkvkwtgsrvdlvfgsnselralvevygaddaqpkf
vqdfvaawdkvmnldrfdvr

    Sequence, based on observed residues (ATOM records): (download) 
    >2ccdB (B:)
mkypvegggnqdwwpnrlnlkvlhqnpavadpmgaafdyaaevatidvdaltrdieevmt
tsqpwwpadyghygplfirmawhaagtyrihdgrggagggmqrfaplnswpdnasldkar
rllwpvkkkygkklswadlivfagncalesmgfktfgfgfgrvdqwepdevywgkeatwl
gderysgkrdlenplaavqmgliyvnpegpngnpdpmaaavdiretfrrmamndvetaal
ivgghtfgkthgagpadlvgpepeaapleqmglgwkssygtgtgkdaittgievvwtntp
tkwdnsfleilygyeweltkspagawqytakdgagagtipdpfggpgrsptmlatdlslr
vdpiyeritrrwlehpeeladefakawyklihrdmgpvarylgplvpkqtllwqdpvpav
shdlvgeaeiaslksqirasgltvsqlvstawaaassfrgsdkrgganggrirlqpqvgw
evndpdgdlrkvirtleeiqesfnsaapgnikvsfadlvvlggcaaiekaakaaghnitv
pftpgrtdasqeqtdvesfavlepkadgfrnylgkgnplpaeymlldkanlltlsapemt
vlvgglrvlganykrlplgvfteasesltndffvnlldmgitwepspaddgtyqgkdgsg
kvkwtgsrvdlvfgsnselralvevygaddaqpkfvqdfvaawdkvmnldrfdvr