PDB entry 2ca1

View 2ca1 on RCSB PDB site
Description: crystal structure of the ibv coronavirus nucleocapsid
Class: viral protein
Keywords: nucleocapsid protein, viral nucleoprotein, viral protein
Deposited on 2005-12-16, released 2006-06-19
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.2031
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nucleocapsid protein
    Species: AVIAN INFECTIOUS BRONCHITIS VIRUS [TaxId:11120]
    Database cross-references and differences (RAF-indexed):
    • PDB 2CA1 (0-1)
    • Uniprot Q4ZJS4 (2-110)
    Domains in SCOPe 2.05: d2ca1a1
  • Chain 'B':
    Compound: nucleocapsid protein
    Species: AVIAN INFECTIOUS BRONCHITIS VIRUS [TaxId:11120]
    Database cross-references and differences (RAF-indexed):
    • PDB 2CA1
    • Uniprot Q4ZJS4 (Start-110)
    Domains in SCOPe 2.05: d2ca1b_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2ca1A (A:)
hmkademahrryckrtippnyrvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlv
psshaclfgsrvtpklqldglhlrfefttvvpcddpqfdnyvkicdqcvdg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ca1B (B:)
hmkademahrryckrtippnyrvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlv
psshaclfgsrvtpklqldglhlrfefttvvpcddpqfdnyvkicdqcvdg

    Sequence, based on observed residues (ATOM records): (download) 
    >2ca1B (B:)
rryckrtippnyrvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpsshaclfg
srvtpklqldglhlrfefttvvpcddpqfdnyvkicdqcvdg