PDB entry 2c9n

View 2c9n on RCSB PDB site
Description: structure of the epstein-barr virus zebra protein at approximately 3.5 angstrom resolution
Class: viral protein/DNA
Keywords: epstein-barr virus, ebv, zebra, bzlf1, zta, z, lytic cycle activation, bzip protein, viral protein DNA-binding, nuclear protein, transcription regulation
Deposited on 2005-12-13, released 2006-02-21
The last revision prior to the SCOP 1.73 freeze date was dated 2006-02-21, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: 0.368
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5'-d(*cp*ap*cp*tp*gp*ap*cp*tp*cp*ap *t)-3'
  • Chain 'B':
    Compound: 5'-d(*cp*ap*tp*gp*ap*gp*tp*cp*ap*gp *t)-3'
  • Chain 'Y':
    Compound: bzlf1 trans-activator protein
    Species: HUMAN HERPESVIRUS 4
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2c9ny1
  • Chain 'Z':
    Compound: bzlf1 trans-activator protein
    Species: HUMAN HERPESVIRUS 4
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2c9nz1

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'Y':
    Sequence, based on SEQRES records: (download) 
    >2c9nY (Y:)
mleikryknrvasrkcrakfkqllqhyrevaaakssendrlrlllkqmcpsldvdsiipr
tpd

    Sequence, based on observed residues (ATOM records): (download) 
    >2c9nY (Y:)
kryknrvasrkcrakfkqllqhyrevaaakssendrlrlllkqmcpsldvdsiiprtpd

  • Chain 'Z':
    Sequence, based on SEQRES records: (download) 
    >2c9nZ (Z:)
mleikryknrvasrkcrakfkqllqhyrevaaakssendrlrlllkqmcpsldvdsiipr
tpd

    Sequence, based on observed residues (ATOM records): (download) 
    >2c9nZ (Z:)
kryknrvasrkcrakfkqllqhyrevaaakssendrlrlllkqmcpsldvdsiiprtpd