PDB entry 2c9l

View 2c9l on RCSB PDB site
Description: structure of the epstein-barr virus zebra protein
Class: viral protein/DNA
Keywords: epstein-barr virus, ebv, zebra, bzlf1, zta, z, lytic cycle activation, bzip protein, viral protein DNA-binding, nuclear protein, transcription regulation
Deposited on 2005-12-13, released 2006-02-21
The last revision prior to the SCOP 1.73 freeze date was dated 2006-02-21, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: 0.2317
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: 5'-d(*ap*ap*gp*cp*ap*cp*tp*gp*ap*cp *tp*cp*ap*tp*gp*ap*ap*gp*t)-3'
  
• Chain 'B':
  Compound: 5'-d(*ap*cp*tp*tp*cp*ap*cp*tp*gp*ap *gp*tp*cp*ap*gp*tp*gp*cp*t)-3'
  
• Chain 'Y':
  Compound: bzlf1 trans-activator protein
  Species: HUMAN HERPESVIRUS 4
  Database cross-references and differences (RAF-indexed):
  • Uniprot P03206 (1-62)
  Domains in SCOP 1.73: d2c9ly1
• Chain 'Z':
  Compound: bzlf1 trans-activator protein
  Species: HUMAN HERPESVIRUS 4
  Database cross-references and differences (RAF-indexed):
  • Uniprot P03206 (1-62)
  Domains in SCOP 1.73: d2c9lz1
• Heterogens: HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'Y':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2c9lY (Y:)
  mleikryknrvaarksrakfkqllqhyrevaaakssendrlrlllkqmcpsldvdsiipr
  tpd
  

  
  
• Chain 'Z':
  Sequence, based on SEQRES records: (download)
  

  >2c9lZ (Z:)
  mleikryknrvaarksrakfkqllqhyrevaaakssendrlrlllkqmcpsldvdsiipr
  tpd
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >2c9lZ (Z:)
  leikryknrvaarksrakfkqllqhyrevaaakssendrlrlllkqmcpsldvdsiiprt
  pd