PDB entry 2c9j

View 2c9j on RCSB PDB site
Description: structure of the fluorescent protein cmfp512 at 1.35a from cerianthus membranaceus
Class: luminescent protein
Keywords: fluorescent protein, beta-barrel, bioluminescence, luminescence, luminescent protein
Deposited on 2005-12-12, released 2006-10-30
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-06-23, with a file datestamp of 2009-06-19.
Experiment type: XRAY
Resolution: 1.35 Å
R-factor: 0.229
AEROSPACI score: 0.64 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: green fluorescent protein fp512
    Species: CERIANTHUS MEMBRANACEUS [TaxId:208460]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5ZQQ5
      • chromophore (61)
    Domains in SCOPe 2.02: d2c9ja_
  • Chain 'B':
    Compound: green fluorescent protein fp512
    Species: CERIANTHUS MEMBRANACEUS [TaxId:208460]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5ZQQ5
      • chromophore (61)
    Domains in SCOPe 2.02: d2c9jb_
  • Chain 'C':
    Compound: green fluorescent protein fp512
    Species: CERIANTHUS MEMBRANACEUS [TaxId:208460]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5ZQQ5
      • chromophore (61)
    Domains in SCOPe 2.02: d2c9jc_
  • Chain 'D':
    Compound: green fluorescent protein fp512
    Species: CERIANTHUS MEMBRANACEUS [TaxId:208460]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5ZQQ5
      • chromophore (61)
    Domains in SCOPe 2.02: d2c9jd_
  • Chain 'E':
    Compound: green fluorescent protein fp512
    Species: CERIANTHUS MEMBRANACEUS [TaxId:208460]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5ZQQ5
      • chromophore (61)
    Domains in SCOPe 2.02: d2c9je_
  • Chain 'F':
    Compound: green fluorescent protein fp512
    Species: CERIANTHUS MEMBRANACEUS [TaxId:208460]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5ZQQ5
      • chromophore (61)
    Domains in SCOPe 2.02: d2c9jf_
  • Chain 'G':
    Compound: green fluorescent protein fp512
    Species: CERIANTHUS MEMBRANACEUS [TaxId:208460]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5ZQQ5
      • chromophore (61)
    Domains in SCOPe 2.02: d2c9jg_
  • Chain 'H':
    Compound: green fluorescent protein fp512
    Species: CERIANTHUS MEMBRANACEUS [TaxId:208460]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5ZQQ5
      • chromophore (61)
    Domains in SCOPe 2.02: d2c9jh_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2c9jA (A:)
msqldnnlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmg
fqygfraftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwa
lgvnfppngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrsk
ksgqplpgfhfikhrlvktkvepgfkmveqaeyatahvcdlpkpn

    Sequence, based on observed residues (ATOM records): (download) 
    >2c9jA (A:)
nlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmgfqygfr
aftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwalgvnfp
pngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrskksgqpl
pgfhfikhrlvktkvepgfkmveqaeyatahvcdlp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2c9jB (B:)
msqldnnlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmg
fqygfraftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwa
lgvnfppngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrsk
ksgqplpgfhfikhrlvktkvepgfkmveqaeyatahvcdlpkpn

    Sequence, based on observed residues (ATOM records): (download) 
    >2c9jB (B:)
ldnnlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmgfqy
gfraftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwalgv
nfppngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrskksg
qplpgfhfikhrlvktkvepgfkmveqaeyatahvcdlpk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2c9jC (C:)
msqldnnlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmg
fqygfraftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwa
lgvnfppngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrsk
ksgqplpgfhfikhrlvktkvepgfkmveqaeyatahvcdlpkpn

    Sequence, based on observed residues (ATOM records): (download) 
    >2c9jC (C:)
ldnnlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmgfqy
gfraftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwalgv
nfppngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrskksg
qplpgfhfikhrlvktkvepgfkmveqaeyatahvcdlpk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2c9jD (D:)
msqldnnlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmg
fqygfraftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwa
lgvnfppngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrsk
ksgqplpgfhfikhrlvktkvepgfkmveqaeyatahvcdlpkpn

    Sequence, based on observed residues (ATOM records): (download) 
    >2c9jD (D:)
ldnnlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmgfqy
gfraftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwalgv
nfppngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrskksg
qplpgfhfikhrlvktkvepgfkmveqaeyatahvcdlpkp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2c9jE (E:)
msqldnnlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmg
fqygfraftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwa
lgvnfppngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrsk
ksgqplpgfhfikhrlvktkvepgfkmveqaeyatahvcdlpkpn

    Sequence, based on observed residues (ATOM records): (download) 
    >2c9jE (E:)
dnnlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmgfqyg
fraftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwalgvn
fppngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrskksgq
plpgfhfikhrlvktkvepgfkmveqaeyatahvcdlpkp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2c9jF (F:)
msqldnnlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmg
fqygfraftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwa
lgvnfppngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrsk
ksgqplpgfhfikhrlvktkvepgfkmveqaeyatahvcdlpkpn

    Sequence, based on observed residues (ATOM records): (download) 
    >2c9jF (F:)
nlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmgfqygfr
aftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwalgvnfp
pngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrskksgqpl
pgfhfikhrlvktkvepgfkmveqaeyatahvcdlpkp

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2c9jG (G:)
msqldnnlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmg
fqygfraftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwa
lgvnfppngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrsk
ksgqplpgfhfikhrlvktkvepgfkmveqaeyatahvcdlpkpn

    Sequence, based on observed residues (ATOM records): (download) 
    >2c9jG (G:)
dnnlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmgfqyg
fraftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwalgvn
fppngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrskksgq
plpgfhfikhrlvktkvepgfkmveqaeyatahvcdlpkp

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2c9jH (H:)
msqldnnlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmg
fqygfraftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwa
lgvnfppngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrsk
ksgqplpgfhfikhrlvktkvepgfkmveqaeyatahvcdlpkpn

    Sequence, based on observed residues (ATOM records): (download) 
    >2c9jH (H:)
ldnnlsvsvymkgnvnnhefeydgigggdpnsgqfslktklrggkplpfsydiitmgfqy
gfraftkypegiadyfkgsfpeafqwnrriefedggvinmssditykdkvlhgdvwalgv
nfppngpvmkneivmeepaeetltakngvlvgfcpkayllkdgsyyyghmttfyrskksg
qplpgfhfikhrlvktkvepgfkmveqaeyatahvcdlpkp