PDB entry 2c8i

View 2c8i on RCSB PDB site
Description: Complex Of Echovirus Type 12 With Domains 1, 2, 3 and 4 Of Its Receptor Decay Accelerating Factor (Cd55) By Cryo Electron Microscopy At 16 A
Class: virus/receptor
Keywords: picornavirus, daf, virus-receptor complex, antigen, blood group antigen, complement pathway, gpi-anchor, immune response, innate immunity, lipoprotein, plasma, sushi
Deposited on 2005-12-05, released 2006-01-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-08-30, with a file datestamp of 2017-08-25.
Experiment type: EM
Resolution: N/A
R-factor: N/A
AEROSPACI score: -0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: echovirus 11 coat protein vp1
    Species: HUMAN ECHOVIRUS 11 [TaxId:12078]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2c8ia1
  • Chain 'B':
    Compound: echovirus 11 coat protein vp2
    Species: HUMAN ECHOVIRUS 11 [TaxId:12078]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P29813 (0-251)
      • conflict (216)
  • Chain 'C':
    Compound: echovirus 11 coat protein vp3
    Species: HUMAN ECHOVIRUS 11 [TaxId:12078]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P29813 (0-237)
      • conflict (62)
    Domains in SCOPe 2.08: d2c8ic1
  • Chain 'D':
    Compound: echovirus 11 coat protein vp4
    Species: HUMAN ECHOVIRUS 11 [TaxId:12078]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: complement decay-accelerating factor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2c8ie1, d2c8ie2, d2c8ie3, d2c8ie4

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2c8iA (A:)
gdvveavenavarvadtigsgpsnsqavpaltavetghtsqvtpsdtvqtrhvknyhsrs
essienflsrsacvymgeyhttnsdqtklfaswtisarrmvqmrrkleiftyvrfdvevt
fvitskqdqgtqlgqdmpplthqimyippggpipksvtdytwqtstnpsifwtegnappr
msipfisignaysnfydgwshfsqngvygyntlnhmgqiyvrhvngssplpmtstvrmyf
kpkhvkawvprpprlcqyknastvnfsptditdkrnsityipdtvkpdv

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2c8iC (C:)
glpvintpgsnqfltsddfqspsampqfdvtpelnipgevqnlmeiaevdsvvpvnnvag
nletmdiyripvqsgnhqssqvfgfqvqpgldgvfkhtllgeilnyyahwsgsikltfvf
cgsamatgkfllayappganapksrkdamlgthiiwdvglqsscvlcipwisqthyrlvq
qdeytsagnvtcwyqtgivvpagtptscsimcfvsacndfsvrllkdtpfiqqaallq

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2c8iE (E:)
qdcglppdvpnaqpalegrtsfpedtvitykceesfvkipgekdsviclkgsqwsdieef
cnrsqdcglppdvpnaqpalegrtsfpedtvitykceesfvkipgekdsviclkgsqwsd
ieefcnrscevptrlnsaslkqpyitqnyfpvgtvveyecrpgyrrepslspkltclqnl
kwstavefckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgs
svqwsdplpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctv
nndegewsgpppecrg

    Sequence, based on observed residues (ATOM records): (download) 
    >2c8iE (E:)
qdcglppdvpnaqpalegrtsfpedtvitykceesfvkipgekdsviclkgsqwsdieef
cnrscevptrlnsaslkqpyitqnyfpvgtvveyecrpgyrrepslspkltclqnlkwst
avefckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvqw
sdplpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnnde
gewsgpppecrg