SCOPe 2.08: Structural Classification of Proteins

PDB entry 2c39

View 2c39 on RCSB PDB site
Description: RNAse ph core of the archaeal exosome in complex with ADP
Class: hydrolase
Keywords: exosome, RNAse ph, rrp41, rrp42, phosphorolytic, exoribonuclease, RNA degradation, archaeal, hydrolase, exonuclease, nuclease
Deposited on 2005-10-05, released 2005-11-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: 0.275
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOPe 2.08: d2c39a1, d2c39a2
Chain 'B':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOPe 2.08: d2c39b1, d2c39b2
Chain 'C':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOPe 2.08: d2c39c1, d2c39c2
Chain 'D':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (0-247)
Domains in SCOPe 2.08: d2c39d1, d2c39d2
Chain 'E':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOPe 2.08: d2c39e1, d2c39e2
Chain 'F':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOPe 2.08: d2c39f1, d2c39f2
Chain 'G':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOPe 2.08: d2c39g1, d2c39g2
Chain 'H':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Chain 'I':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOPe 2.08: d2c39i1, d2c39i2
Chain 'J':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOPe 2.08: d2c39j1, d2c39j2
Chain 'K':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOPe 2.08: d2c39k1, d2c39k2
Chain 'L':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOPe 2.08: d2c39l1, d2c39l2
Chain 'M':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOPe 2.08: d2c39m1, d2c39m2
Chain 'N':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOPe 2.08: d2c39n1, d2c39n2
Chain 'O':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOPe 2.08: d2c39o1, d2c39o2
Chain 'P':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (0-247)
Domains in SCOPe 2.08: d2c39p1, d2c39p2
Chain 'Q':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOPe 2.08: d2c39q1, d2c39q2
Chain 'R':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (0-247)
Domains in SCOPe 2.08: d2c39r1, d2c39r2
Chain 'S':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-End)
Domains in SCOPe 2.08: d2c39s1, d2c39s2
Chain 'T':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (0-247)
Domains in SCOPe 2.08: d2c39t1, d2c39t2
Chain 'U':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-End)
Domains in SCOPe 2.08: d2c39u1, d2c39u2
Chain 'V':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2
Domains in SCOPe 2.08: d2c39v1, d2c39v2
Chain 'W':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOPe 2.08: d2c39w1, d2c39w2
Chain 'X':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus [TaxId:2287]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOPe 2.08: d2c39x1, d2c39x2
Heterogens: ADP

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>2c39A (A:)
msstpsnqniipiikkesivslfekgirqdgrkltdyrplsitldyakkadgsalvklgt
tmvlagtkleidkpyedtpnqgnlivnvellplayetfepgppdenaielarvvdrslrd
skaldltklviepgksvwtvwldvyvldyggnvldactlasvaalyntkvykveqhsngi
svnknevvgklplnypvvtisvakvdkylvvdpdldeesimdakisfsytpdlkivgiqk
sgkgsmslqdidqaentarstavklleelkkhlgi