PDB entry 2bvp
View 2bvp on RCSB PDB site
Description: structures of three hiv-1 hla-b5703-peptide complexes and identification of related hlas potentially associated with long-term non-progression
Class: glycoprotein/peptide complex
Keywords: MHC, hla-b57, ltnp, hiv-1, glycoprotein, MHC I, polymorphism, transmembrane, immunoglobulin domain, pyrrolidone carboxylic acid, glycoprotein/peptide complex, immune response
Deposited on
2005-07-01, released
2005-09-07
The last revision prior to the SCOP 1.73 freeze date was dated
2005-09-07, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 1.35 Å
R-factor: 0.1977
AEROSPACI score: 0.69
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hla class I histocompatibility antigen, b-57 alpha chain
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
- Uniprot P18465 (0-End)
- conflict (113)
- conflict (115)
Domains in SCOP 1.73: d2bvpa1, d2bvpa2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d2bvpb1 - Chain 'C':
Compound: hiv-p24
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2bvpA (A:)
gshsmryfytamsrpgrgeprfiavgyvddtqfvrfdsdaasprmaprapwieqegpeyw
dgetrnmkasaqtyrenlrialryynqseagshiiqvmygcdvgpdgrllrghnqyaydg
kdyialnedlsswtaadtaaqitqrkweaarvaeqlrayleglcvewlrrylengketlq
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwep
Sequence, based on observed residues (ATOM records): (download)
>2bvpA (A:)
gshsmryfytamsrpgrgeprfiavgyvddtqfvrfdsdaasprmaprapwieqegpeyw
dgetrnmkasaqtyrenlrialryynqseagshiiqvmygcdvgpdgrllrghnqyaydg
kdyialnedlsswtaadtaaqitqrkweaarvaeqlrayleglcvewlrrylengketlq
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrw
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2bvpB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
Sequence, based on observed residues (ATOM records): (download)
>2bvpB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'C':
No sequence available.