PDB entry 2bvp

View 2bvp on RCSB PDB site
Description: structures of three hiv-1 hla-b5703-peptide complexes and identification of related hlas potentially associated with long-term non-progression
Class: glycoprotein/peptide complex
Keywords: MHC, hla-b57, ltnp, hiv-1, glycoprotein, MHC I, polymorphism, transmembrane, immunoglobulin domain, pyrrolidone carboxylic acid, glycoprotein/peptide complex, immune response
Deposited on 2005-07-01, released 2005-09-07
The last revision prior to the SCOP 1.73 freeze date was dated 2005-09-07, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.35 Å
R-factor: 0.1977
AEROSPACI score: 0.69 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hla class I histocompatibility antigen, b-57 alpha chain
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
    • Uniprot P18465 (0-End)
      • conflict (113)
      • conflict (115)
    Domains in SCOP 1.73: d2bvpa1, d2bvpa2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2bvpb1
  • Chain 'C':
    Compound: hiv-p24
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2bvpA (A:)
    gshsmryfytamsrpgrgeprfiavgyvddtqfvrfdsdaasprmaprapwieqegpeyw
    dgetrnmkasaqtyrenlrialryynqseagshiiqvmygcdvgpdgrllrghnqyaydg
    kdyialnedlsswtaadtaaqitqrkweaarvaeqlrayleglcvewlrrylengketlq
    radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
    fqkwaavvvpsgeeqrytchvqheglpkpltlrwep
    

    Sequence, based on observed residues (ATOM records): (download)
    >2bvpA (A:)
    gshsmryfytamsrpgrgeprfiavgyvddtqfvrfdsdaasprmaprapwieqegpeyw
    dgetrnmkasaqtyrenlrialryynqseagshiiqvmygcdvgpdgrllrghnqyaydg
    kdyialnedlsswtaadtaaqitqrkweaarvaeqlrayleglcvewlrrylengketlq
    radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
    fqkwaavvvpsgeeqrytchvqheglpkpltlrw
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2bvpB (B:)
    miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
    wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

    Sequence, based on observed residues (ATOM records): (download)
    >2bvpB (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    No sequence available.