PDB entry 2bvm

View 2bvm on RCSB PDB site
Description: crystal structure of the catalytic domain of toxin b from clostridium difficile in complex with udp, glc and manganese ion
Class: toxin
Keywords: toxin,glycosyltransferase
Deposited on 2005-06-30, released 2005-08-03
The last revision prior to the SCOP 1.75 freeze date was dated 2006-12-20, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: 0.2
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: toxin b
    Species: Clostridium difficile
    Database cross-references and differences (RAF-indexed):
    • Uniprot P18177 (0-0)
      • engineered mutation (58)
      • engineered mutation (243)
      • engineered mutation (541)
    • Uniprot P18177 (1-541)
    Domains in SCOP 1.75: d2bvma1
  • Heterogens: GLC, MN, SO4, UDP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2bvmA (A:)
mslvnrkqlekmanvrfrtqedeyvaildaleeyhnmsentvvekylklkdinsltdici
dtykksgrnkalkkfkeylvtevlelknnnltpveknlhfvwiggqindtainyinqwkd
vnsdynvnvfydsnaflintlkktvvesaindtlesfrenlndprfdynkffrkrmeiiy
dkqknfinyykaqreenpeliiddivktylsneyskeidelntyieeslnkitqnsgndv
rnfgefkngesfnlyeqelverwnlaaasdilrisalkeiggmyldvdmlpgiqpdlfes
iekpssvtvdfwemtkleaimkykeyipeytsehfdmldeevqssfesvlasksdkseif
sslgdmeasplevkiafnskgiinqglisvkdsycsnlivkqienrykilnnslnpaise
dndfntttntfidsimaeanadngrfmmelgkylrvgffpdvkttinlsgpeayaaayqd
llmfkegsmnihlieadlrnfeisktnisqsteqemaslwsfddarakaqfeeykrnyfe
ga