PDB entry 2bss

View 2bss on RCSB PDB site
Description: crystal structures and kir3dl1 recognition of three immunodominant viral peptides complexed to hla-b2705
Class: immune system/peptide
Keywords: immune system/peptide, complex (antigen/peptide), immune system, MHC (major histocompatibility complex), MHC hla-b27, human ebv hiv, complex antigen peptide
Deposited on 2005-05-23, released 2005-05-24
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.231
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hla class I histocompatibility antigen b-27 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03989 (0-275)
      • conflict (115)
    Domains in SCOPe 2.07: d2bssa1, d2bssa2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2BSS (1-10)
    • Uniprot P61769 (1-99)
    Domains in SCOPe 2.07: d2bssb2, d2bssb3
  • Chain 'C':
    Compound: hiv peptide
    Species: HUMAN IMMUNODEFICIENCY VIRUS, synthetic [TaxId:12721]
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2bssA (A:)
gshsmryfhtsvsrpgrgeprfitvgyvddtlfvrfdsdaaspreeprapwieqegpeyw
dretqickakaqtdredlrtllryynqseagshtlqnmygcdvgpdgrllrgyhqnaydg
kdyialnedlsswtaadtaaqitqrkweaarvaeqlraylegecvewlrrylengketlq
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwep

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2bssB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    No sequence available.