PDB entry 2bse

View 2bse on RCSB PDB site
Description: structure of lactococcal bacteriophage p2 receptor binding protein in complex with a llama vhh domain
Class: receptor
Keywords: lactococcus lactis, phage, receptor binding protein, llama antibody, vhh, receptor
Deposited on 2005-05-20, released 2005-11-02
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-31.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.253
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: receptor binding protein
    Species: LACTOCOCCUS LACTIS PHAGE P2 [TaxId:100641]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2bsea_
  • Chain 'B':
    Compound: receptor binding protein
    Species: LACTOCOCCUS LACTIS PHAGE P2 [TaxId:100641]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2bseb_
  • Chain 'C':
    Compound: receptor binding protein
    Species: LACTOCOCCUS LACTIS PHAGE P2 [TaxId:100641]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2bsec_
  • Chain 'D':
    Compound: llama immunoglobulin
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 2BSE (Start-122)
    Domains in SCOPe 2.06: d2bsed_
  • Chain 'E':
    Compound: llama immunoglobulin
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 2BSE (Start-122)
    Domains in SCOPe 2.06: d2bsee_
  • Chain 'F':
    Compound: llama immunoglobulin
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 2BSE (Start-122)
    Domains in SCOPe 2.06: d2bsef_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2bseA (A:)
mtiknftffspnstefpvgsnndgklymmltgmdyrtirrkdwssplntalnvqytntsi
iaggryfellnetvalkgdsvnyihanidltqtanpvslsaetannsngvdinngsgvlk
vcfdivttsgtgvtstkpivqtstldsisvndmtvsgsidvpvqtltveagnglqlqltk
knndlvivrffgsvsniqkgwnmsgtwvdrpfrpaavqslvghfagrdtsfhidinpngs
itwwganidktpiatrgngsyfik

    Sequence, based on observed residues (ATOM records): (download) 
    >2bseA (A:)
sidvpvqtltveagnglqlqltkknndlvivrffgsvsniqkgwnmsgtwvdrpfrpaav
qslvghfagrdtsfhidinpngsitwwganidktpiatrgngsyfik

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2bseB (B:)
mtiknftffspnstefpvgsnndgklymmltgmdyrtirrkdwssplntalnvqytntsi
iaggryfellnetvalkgdsvnyihanidltqtanpvslsaetannsngvdinngsgvlk
vcfdivttsgtgvtstkpivqtstldsisvndmtvsgsidvpvqtltveagnglqlqltk
knndlvivrffgsvsniqkgwnmsgtwvdrpfrpaavqslvghfagrdtsfhidinpngs
itwwganidktpiatrgngsyfik

    Sequence, based on observed residues (ATOM records): (download) 
    >2bseB (B:)
sidvpvqtltveagnglqlqltkknndlvivrffgsvsniqkgwnmsgtwvdrpfrpaav
qslvghfagrdtsfhidinpngsitwwganidktpiatrgngsyfik

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2bseC (C:)
mtiknftffspnstefpvgsnndgklymmltgmdyrtirrkdwssplntalnvqytntsi
iaggryfellnetvalkgdsvnyihanidltqtanpvslsaetannsngvdinngsgvlk
vcfdivttsgtgvtstkpivqtstldsisvndmtvsgsidvpvqtltveagnglqlqltk
knndlvivrffgsvsniqkgwnmsgtwvdrpfrpaavqslvghfagrdtsfhidinpngs
itwwganidktpiatrgngsyfik

    Sequence, based on observed residues (ATOM records): (download) 
    >2bseC (C:)
sidvpvqtltveagnglqlqltkknndlvivrffgsvsniqkgwnmsgtwvdrpfrpaav
qslvghfagrdtsfhidinpngsitwwganidktpiatrgngsyfik

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2bseD (D:)
qvqlqesggglvqaggslrlsctasrrtgsnwcmgwfrqlagkepelvvalnfdydmtyy
adsvkgrftvsrdsgkntvylqmnslkpedtaiyycaarsggfssnrelydgwgqgtqvt
vss

    Sequence, based on observed residues (ATOM records): (download) 
    >2bseD (D:)
vqlqesggglvqaggslrlsctasrrtgsnwcmgwfrqlagkepelvvalnfdydmtyya
dsvkgrftvsrdsgkntvylqmnslkpedtaiyycaarsggfssnrelydgwgqgtqvtv
ss

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2bseE (E:)
qvqlqesggglvqaggslrlsctasrrtgsnwcmgwfrqlagkepelvvalnfdydmtyy
adsvkgrftvsrdsgkntvylqmnslkpedtaiyycaarsggfssnrelydgwgqgtqvt
vss

    Sequence, based on observed residues (ATOM records): (download) 
    >2bseE (E:)
vqlqesggglvqaggslrlsctasrrtgsnwcmgwfrqlagkepelvvalnfdydmtyya
dsvkgrftvsrdsgkntvylqmnslkpedtaiyycaarsggfssnrelydgwgqgtqvtv
ss

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2bseF (F:)
qvqlqesggglvqaggslrlsctasrrtgsnwcmgwfrqlagkepelvvalnfdydmtyy
adsvkgrftvsrdsgkntvylqmnslkpedtaiyycaarsggfssnrelydgwgqgtqvt
vss

    Sequence, based on observed residues (ATOM records): (download) 
    >2bseF (F:)
vqlqesggglvqaggslrlsctasrrtgsnwcmgwfrqlagkepelvvalnfdydmtyya
dsvkgrftvsrdsgkntvylqmnslkpedtaiyycaarsggfssnrelydgwgqgtqvtv
ss