PDB entry 2bml

View 2bml on RCSB PDB site
Description: ofloxacin-like antibiotics inhibit pneumococcal cell wall degrading virulence factors
Class: choline-binding domain
Keywords: choline-binding domain, cell wall attachment, ofloxacin-like antibiotics
Deposited on 2005-03-15, released 2005-03-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.22
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: autolysin
    Species: Streptococcus pneumoniae [TaxId:1313]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06653 (Start-125)
      • conflict (111)
    Domains in SCOPe 2.08: d2bmla_
  • Chain 'B':
    Compound: autolysin
    Species: Streptococcus pneumoniae [TaxId:1313]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06653 (0-125)
      • conflict (111)
    Domains in SCOPe 2.08: d2bmlb_
  • Heterogens: TRS, P6G, XED, PG4, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2bmlA (A:)
sypkdkfekingtwyyfdssgymladrwrkhtdgnwywfdnsgematgwkkiadkwyyfn
eegamktgwvkykdtwyyldakegamvsnafiqsadgtgwyylkpdgtladrpeftvepd
glitvk

    Sequence, based on observed residues (ATOM records): (download) 
    >2bmlA (A:)
ypkdkfekingtwyyfdssgymladrwrkhtdgnwywfdnsgematgwkkiadkwyyfne
egamktgwvkykdtwyyldakegamvsnafiqsadgtgwyylkpdgtladrpeftvepdg
litvk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2bmlB (B:)
sypkdkfekingtwyyfdssgymladrwrkhtdgnwywfdnsgematgwkkiadkwyyfn
eegamktgwvkykdtwyyldakegamvsnafiqsadgtgwyylkpdgtladrpeftvepd
glitvk