PDB entry 2bgg

View 2bgg on RCSB PDB site
Description: the structure of a piwi protein from archaeoglobus fulgidus complexed with a 16nt sirna duplex.
Class: protein/RNA complex
Keywords: argonaute, piwi domain, rnai, risc, protein/RNA complex
Deposited on 2004-12-22, released 2005-03-31
The last revision prior to the SCOP 1.73 freeze date was dated 2006-12-21, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.1835
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein af1318
    Species: Archaeoglobus fulgidus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2bgga1
  • Chain 'B':
    Compound: protein af1318
    Species: Archaeoglobus fulgidus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2bggb1
  • Chain 'P':
    Compound: 5'-r(*up*up*cp*gp*ap*cp*gp*cp)-3'
  • Chain 'Q':
    Compound: 5'-r(*gp*up*cp*gp*ap*ap*up*up)-3'
  • Chain 'R':
    Compound: 5'-r(*up*up*cp*gp*ap*cp*gp*cp)-3'
  • Chain 'S':
    Compound: 5'-r(*gp*up*cp*gp*ap*ap*up*up)-3'
  • Heterogens: MN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2bggA (A:)
mmeykivengltyrigngasvpisntgelikglrnygpyevpslkynqialihnnqfssl
inqlksqisskidevwhihninisefiydsphfdsiksqvdnaidtgvdgimlvlpeynt
plyyklksylinsipsqfmrydilsnrnltfyvdnllvqfvsklggkpwilnvdpekgsd
iiigtgatridnvnlfcfamvfkkdgtmlwneispivtsseyltylkstikkvvygfkks
npdwdvekltlhvsgkrpkmkdgetkilketveelkkqemvsrdvkyailhlnethpfwv
mgdpnnrfhpyegtkvklsskrylltllqpylkrnglemvtpikplsveivsdnwtseey
yhnvheildeiyylskmnwrgfrsrnlpvtvnypklvagiianvnryggypinpegnrsl
qtnpwfl

    Sequence, based on observed residues (ATOM records): (download) 
    >2bggA (A:)
ltyrigngasvpisntgelikglrnygpyevpslkynqialihnnqfsslinqlksqiss
kidevwhihninisefiydsphfdsiksqvdnaidtgvdgimlvlpeyntplyyklksyl
insipsqfmrydilsnrnltfyvdnllvqfvsklggkpwilnvdpekgsdiiigtgatri
dnvnlfcfamvfkkdgtmlwneispivtsseyltylkstikkvvygfkksnpdwdveklt
lhvsgkrpkmkdgetkilketveelkkqemvsrdvkyailhlnethpfwvmegtkvklss
krylltllqpyvtpikplsveivsdnwtseeyyhnvheildeiyylskmnwrgfrsrnlp
vtvnypklvagiianvnryggypinrslqtnpwfl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2bggB (B:)
mmeykivengltyrigngasvpisntgelikglrnygpyevpslkynqialihnnqfssl
inqlksqisskidevwhihninisefiydsphfdsiksqvdnaidtgvdgimlvlpeynt
plyyklksylinsipsqfmrydilsnrnltfyvdnllvqfvsklggkpwilnvdpekgsd
iiigtgatridnvnlfcfamvfkkdgtmlwneispivtsseyltylkstikkvvygfkks
npdwdvekltlhvsgkrpkmkdgetkilketveelkkqemvsrdvkyailhlnethpfwv
mgdpnnrfhpyegtkvklsskrylltllqpylkrnglemvtpikplsveivsdnwtseey
yhnvheildeiyylskmnwrgfrsrnlpvtvnypklvagiianvnryggypinpegnrsl
qtnpwfl

    Sequence, based on observed residues (ATOM records): (download) 
    >2bggB (B:)
gltyrigngasvpisntgelikglrnygpyevpslkynqialihnsslinqlksqisski
devwhihninisefiydsphfdsiksqvdnaidtgvdgimlvlpeyntplyyklksylin
sipsqfmrydilsnrnltfyvdnllvqfvsklggkpwilnvdpekgsdiiigtgatridn
vnlfcfamvfkkdgtmlwneispivtsseyltylkstikkvvygfkksnpdwdvekltlh
vsgkrpkmkdgetkilketveelkkqemvsrdvkyailhlnethpfwvmgtkvklsskry
lltllqvtpikplsveivsdnwtseeyyhnvheildeiyylskmnwrgfrsrnlpvtvny
pklvagiianvnryggypinpegnrslqtnpwfl

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    No sequence available.

  • Chain 'R':
    No sequence available.

  • Chain 'S':
    No sequence available.