PDB entry 2bcg

View 2bcg on RCSB PDB site
Description: Structure of doubly prenylated Ypt1:GDI complex
Class: Protein Transport
Keywords: RabGTPase, geranylgeranylation, vesicular transport
Deposited on 2005-10-19, released 2006-01-17
The last revision prior to the SCOP 1.73 freeze date was dated 2006-01-24, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.48 Å
R-factor: 0.165
AEROSPACI score: 0.65 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'G':
    Compound: Secretory pathway GDP dissociation inhibitor
    Species: Saccharomyces cerevisiae
    Gene: GDI1
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2bcgg1, d2bcgg2, d2bcgg3
  • Chain 'Y':
    Compound: GTP-binding protein YPT1
    Species: Saccharomyces cerevisiae
    Gene: YPT1
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2bcgy1
  • Heterogens: MG, GDP, GER, TRS, HOH

PDB Chain Sequences:

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2bcgG (G:)
ghmdqetidtdydvivlgtgitecilsgllsvdgkkvlhidkqdhyggeaasvtlsqlye
kfkqnpiskeereskfgkdrdwnvdlipkflmangeltnilihtdvtryvdfkqvsgsyv
fkqgkiykvpaneieaissplmgifekrrmkkflewissykeddlsthqgldldkntmde
vyykfglgnstkefighamalwtnddylqqparpsferillycqsvarygkspylypmyg
lgelpqgfarlsaiyggtymldtpidevlykkdtgkfegvktklgtfkaplviadptyfp
ekckstgqrviraicilnhpvpntsnadslqiiipqsqlgrksdiyvaivsdahnvcskg
hylaiistiietdkphielepafkllgpieekfmgiaelfepredgskdniylsrsydas
shfesmtddvkdiyfrvtghplvlkqrqeqekq

    Sequence, based on observed residues (ATOM records): (download) 
    >2bcgG (G:)
tidtdydvivlgtgitecilsgllsvdgkkvlhidkqdhyggeaasvtlsqlyekfkqnp
iskeereskfgkdrdwnvdlipkflmangeltnilihtdvtryvdfkqvsgsyvfkqgki
ykvpaneieaissplmgifekrrmkkflewissykeddlsthqgldldkntmdevyykfg
lgnstkefighamalwtnddylqqparpsferillycqsvarygkspylypmyglgelpq
gfarlsaiyggtymldtpidevlykkdtgkfegvktklgtfkaplviadptyfpekckst
gqrviraicilnhpvpntsnadslqiiipqsqlgrksdiyvaivsdahnvcskghylaii
stiietdkphielepafkllgpieekfmgiaelfepredgskdniylsrsydasshfesm
tddvkdiyfrvtghplvlkqrq

  • Chain 'Y':
    Sequence, based on SEQRES records: (download) 
    >2bcgY (Y:)
mnseydylfklllignsgvgksclllrfsddtytndyistigvdfkiktveldgktvklq
iwdtagqerfrtitssyyrgshgiiivydvtdqesfngvkmwlqeidryatstvlkllvg
nkcdlkdkrvveydvakefadankmpfletsaldstnvedafltmarqikesmsqqnlne
ttqkkedkgnvnlkgqsltntggccc

    Sequence, based on observed residues (ATOM records): (download) 
    >2bcgY (Y:)
seydylfklllignsgvgksclllrfsddtytndyistigvdfkiktveldgktvklqiw
dtagqerfrtitssyyrgshgiiivydvtdqesfngvkmwlqeidryatstvlkllvgnk
cdlkdkrvveydvakefadankmpfletsaldstnvedafltmarqikesmsqqnlnett
qkkedkgnvnlkgq