PDB entry 2bay

View 2bay on RCSB PDB site
Description: Crystal structure of the Prp19 U-box dimer
Class: ligase
Keywords: Prp19, U-box, Ubiquitin Ligase, E3 ligase
Deposited on 2005-10-15, released 2006-01-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: 0.184
AEROSPACI score: 0.65 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pre-mRNA splicing factor PRP19
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PRP19, PSO4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2baya_
  • Chain 'B':
    Compound: Pre-mRNA splicing factor PRP19
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PRP19, PSO4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2bayb_
  • Chain 'C':
    Compound: Pre-mRNA splicing factor PRP19
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PRP19, PSO4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2bayc_
  • Chain 'D':
    Compound: Pre-mRNA splicing factor PRP19
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PRP19, PSO4
    Database cross-references and differences (RAF-indexed):
    • Uniprot P32523 (3-End)
      • cloning artifact (2)
    Domains in SCOPe 2.08: d2bayd2, d2bayd3
  • Chain 'E':
    Compound: Pre-mRNA splicing factor PRP19
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PRP19, PSO4
    Database cross-references and differences (RAF-indexed):
    • Uniprot P32523 (3-End)
      • cloning artifact (0-2)
    Domains in SCOPe 2.08: d2baye2, d2baye3
  • Chain 'F':
    Compound: Pre-mRNA splicing factor PRP19
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: PRP19, PSO4
    Database cross-references and differences (RAF-indexed):
    • Uniprot P32523 (3-End)
      • cloning artifact (2)
    Domains in SCOPe 2.08: d2bayf2, d2bayf3
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2bayA (A:)
gshmlcaisgkvprrpvlspksrtifekslleqyvkdtgndpitneplsieeiveivpsa
q

    Sequence, based on observed residues (ATOM records): (download) 
    >2bayA (A:)
mlcaisgkvprrpvlspksrtifekslleqyvkdtgndpitneplsieeiveivps

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2bayB (B:)
gshmlcaisgkvprrpvlspksrtifekslleqyvkdtgndpitneplsieeiveivpsa
q

    Sequence, based on observed residues (ATOM records): (download) 
    >2bayB (B:)
mlcaisgkvprrpvlspksrtifekslleqyvkdtgndpitneplsieeiveivps

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2bayC (C:)
gshmlcaisgkvprrpvlspksrtifekslleqyvkdtgndpitneplsieeiveivpsa
q

    Sequence, based on observed residues (ATOM records): (download) 
    >2bayC (C:)
mlcaisgkvprrpvlspksrtifekslleqyvkdtgndpitneplsieeiveivp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2bayD (D:)
gshmlcaisgkvprrpvlspksrtifekslleqyvkdtgndpitneplsieeiveivpsa
q

    Sequence, based on observed residues (ATOM records): (download) 
    >2bayD (D:)
hmlcaisgkvprrpvlspksrtifekslleqyvkdtgndpitneplsieeiveivp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2bayE (E:)
gshmlcaisgkvprrpvlspksrtifekslleqyvkdtgndpitneplsieeiveivpsa
q

    Sequence, based on observed residues (ATOM records): (download) 
    >2bayE (E:)
gshmlcaisgkvprrpvlspksrtifekslleqyvkdtgndpitneplsieeiveivps

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2bayF (F:)
gshmlcaisgkvprrpvlspksrtifekslleqyvkdtgndpitneplsieeiveivpsa
q

    Sequence, based on observed residues (ATOM records): (download) 
    >2bayF (F:)
hmlcaisgkvprrpvlspksrtifekslleqyvkdtgndpitneplsieeiveivpsa