PDB entry 2b8o

View 2b8o on RCSB PDB site
Description: Crystal Structure of Glu-Gly-Arg-Chloromethyl Ketone-Factor VIIa/Soluble Tissue Factor Complex
Class: hydrolase/hydrolase inhibitor
Keywords: Serine protease, Calcium, Magnesium, Zinc, Sodium, Factor VIIa, Tissue factor, EGR, Glu-Gly-Arg Chloromethylketone, blood coagualtion, clotting, blood, coagulation, clotting factor, coagulation factor
Deposited on 2005-10-08, released 2007-02-13
The last revision prior to the SCOP 1.73 freeze date was dated 2007-02-13, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.225
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: Coagulation factor VII heavy chain
    Species: HOMO SAPIENS
    Gene: F7
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2b8oh1
  • Chain 'I':
    Compound: Glu-Gly-Arg-Chloromethyl ketone inhibitor
  • Chain 'L':
    Compound: Coagulation factor VII light chain
    Species: HOMO SAPIENS
    Gene: F7
    Database cross-references and differences (RAF-indexed):
    • Uniprot P08709 (0-141)
      • modified residue (5-6)
      • modified residue (13)
      • modified residue (15)
      • modified residue (18-19)
      • modified residue (24-25)
      • modified residue (28)
      • modified residue (34)
    Domains in SCOP 1.73: d2b8ol1, d2b8ol2, d2b8ol3
  • Chain 'T':
    Compound: tissue factor
    Species: HOMO SAPIENS
    Gene: F3
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2b8ot1, d2b8ot2
  • Heterogens: GLC, FUC, CA, MG, NA, ZN, CL, HOH

PDB Chain Sequences:

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2b8oH (H:)
ivggkvcpkgecpwqvlllvngaqlcggtlintiwvvsaahcfdkiknwrnliavlgehd
lsehdgdeqsrrvaqviipstyvpgttnhdiallrlhqpvvltdhvvplclpertfsert
lafvrfslvsgwgqlldrgatalelmvlnvprlmtqdclqqsrkvgdspniteymfcagy
sdgskdsckgdsggphathyrgtwyltgivswgqgcatvghfgvytrvsqyiewlqklmr
seprpgvllrapfp

  • Chain 'I':
    No sequence available.

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2b8oL (L:)
anafleelrpgslereckeeqcsfeeareifkdaertklfwisysdgdqcasspcqnggs
ckdqlqsyicfclpafegrncethkddqlicvnenggceqycsdhtgtkrscrchegysl
ladgvsctptveypcgkipile

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >2b8oT (T:)
tvaaynltwkstnfktilewepkpvnqvytvqistksgdwkskcfyttdtecdltdeivk
dvkqtylarvfsypagnvestgsageplyenspeftpyletnlgqptiqsfeqvgtkvnv
tvedertlvrrnntflslrdvfgkdliytlyywkssssgkktaktntneflidvdkgeny
cfsvqavipsrtvnrkstdspvecm

    Sequence, based on observed residues (ATOM records): (download) 
    >2b8oT (T:)
tvaaynltwkstnfktilewepkpvnqvytvqistksgdwkskcfyttdtecdltdeivk
dvkqtylarvfsypagngeplyenspeftpyletnlgqptiqsfeqvgtkvnvtvedert
lvrrnntflslrdvfgkdliytlyywktaktntneflidvdkgenycfsvqavipsrtvn
rkstdspvecm