PDB entry 2b3j

View 2b3j on RCSB PDB site
Description: Crystal Structure of Staphylococcus aureus tRNA Adenosine Deaminase, TadA, in Complex with RNA
Class: hydrolase/RNA
Keywords: mixed alpha-beta, protein-rna complex, RNA stem-loop
Deposited on 2005-09-20, released 2006-01-24
The last revision prior to the SCOP 1.73 freeze date was dated 2006-02-28, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.215
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA adenosine deaminase
    Species: Staphylococcus aureus subsp. aureus Mu50
    Gene: TADA
    Database cross-references and differences (RAF-indexed):
    • GB NP_371082 (3-End)
    Domains in SCOP 1.73: d2b3ja1
  • Chain 'B':
    Compound: tRNA adenosine deaminase
    Species: Staphylococcus aureus subsp. aureus Mu50
    Gene: TADA
    Database cross-references and differences (RAF-indexed):
    • GB NP_371082 (3-End)
    Domains in SCOP 1.73: d2b3jb1
  • Chain 'C':
    Compound: tRNA adenosine deaminase
    Species: Staphylococcus aureus subsp. aureus Mu50
    Gene: TADA
    Database cross-references and differences (RAF-indexed):
    • GB NP_371082 (3-End)
    Domains in SCOP 1.73: d2b3jc1
  • Chain 'D':
    Compound: tRNA adenosine deaminase
    Species: Staphylococcus aureus subsp. aureus Mu50
    Gene: TADA
    Database cross-references and differences (RAF-indexed):
    • GB NP_371082
    Domains in SCOP 1.73: d2b3jd1
  • Chain 'E':
    Compound: anticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42)
    Species: synthetic, synthetic
  • Chain 'F':
    Compound: anticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42)
    Species: synthetic, synthetic
  • Chain 'G':
    Compound: anticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42)
    Species: synthetic, synthetic
  • Chain 'H':
    Compound: anticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42)
    Species: synthetic, synthetic
  • Heterogens: ZN, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2b3jA (A:)
gshmtndiyfmtlaieeakkaaqlgevpigaiitkddeviarahnlretlqqptahaehi
aieraakvlgswrlegctlyvtlepcvmcagtivmsriprvvygaddpkggcsgslmnll
qqsnfnhraivdkgvlkeacstllttffknlrankkstn

    Sequence, based on observed residues (ATOM records): (download) 
    >2b3jA (A:)
mtndiyfmtlaieeakkaaqlgevpigaiitkddeviarahnlretlqqptahaehiaie
raakvlgswrlegctlyvtlepcvmcagtivmsriprvvygaddpkggcsgslmnllqqs
nfnhraivdkgvlkeacstllttffknlran

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2b3jB (B:)
gshmtndiyfmtlaieeakkaaqlgevpigaiitkddeviarahnlretlqqptahaehi
aieraakvlgswrlegctlyvtlepcvmcagtivmsriprvvygaddpkggcsgslmnll
qqsnfnhraivdkgvlkeacstllttffknlrankkstn

    Sequence, based on observed residues (ATOM records): (download) 
    >2b3jB (B:)
mtndiyfmtlaieeakkaaqlgevpigaiitkddeviarahnlretlqqptahaehiaie
raakvlgswrlegctlyvtlepcvmcagtivmsriprvvygaddpkggcsgslmnllqqs
nfnhraivdkgvlkeacstllttffknlran

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2b3jC (C:)
gshmtndiyfmtlaieeakkaaqlgevpigaiitkddeviarahnlretlqqptahaehi
aieraakvlgswrlegctlyvtlepcvmcagtivmsriprvvygaddpkggcsgslmnll
qqsnfnhraivdkgvlkeacstllttffknlrankkstn

    Sequence, based on observed residues (ATOM records): (download) 
    >2b3jC (C:)
mtndiyfmtlaieeakkaaqlgevpigaiitkddeviarahnlretlqqptahaehiaie
raakvlgswrlegctlyvtlepcvmcagtivmsriprvvygaddpkggcsgslmnllqqs
nfnhraivdkgvlkeacstllttffknlrank

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2b3jD (D:)
gshmtndiyfmtlaieeakkaaqlgevpigaiitkddeviarahnlretlqqptahaehi
aieraakvlgswrlegctlyvtlepcvmcagtivmsriprvvygaddpkggcsgslmnll
qqsnfnhraivdkgvlkeacstllttffknlrankkstn

    Sequence, based on observed residues (ATOM records): (download) 
    >2b3jD (D:)
ndiyfmtlaieeakkaaqlgevpigaiitkddeviarahnlretlqqptahaehiaiera
akvlgswrlegctlyvtlepcvmcagtivmsriprvvygaddpkggcsgslmnllqqsnf
nhraivdkgvlkeacstllttffknlrank

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.