PDB entry 2b0d

View 2b0d on RCSB PDB site
Description: EcoRV Restriction Endonuclease/GAATTC/Ca2+
Class: hydrolase/DNA
Keywords: protein-nucleic acid recognition, indirect readout, restriction enzyme, substrate specificity, noncognate, HYDROLASE-DNA COMPLEX
Deposited on 2005-09-13, released 2005-09-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Type II restriction enzyme EcoRV
    Species: Escherichia coli [TaxId:562]
    Gene: ecoRVR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2b0da_
  • Chain 'B':
    Compound: Type II restriction enzyme EcoRV
    Species: Escherichia coli [TaxId:562]
    Gene: ecoRVR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2b0db_
  • Chain 'C':
    Compound: 5'-d(*ap*ap*ap*gp*ap*ap*tp*tp*cp*tp*t)-3'
  • Chain 'D':
    Compound: 5'-d(*ap*ap*ap*gp*ap*ap*tp*tp*cp*tp*t)-3'
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2b0dA (A:)
mslrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhg
yiveepkqqnhypdftlykpsepnkkiaidikttytnkenekikftlggytsfirnntkn
ivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdl
agsgnttnigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwi
yrgrk

    Sequence, based on observed residues (ATOM records): (download) 
    >2b0dA (A:)
slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgy
iveepkqqnhypdftlykpsepnkkiaidikttytnkekikftlggytsfirnntknivy
pfdqyiahwiigyvytrvlktyninelneipkpykgvkvflqdkwviagdlagsgnttni
gsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2b0dB (B:)
mslrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhg
yiveepkqqnhypdftlykpsepnkkiaidikttytnkenekikftlggytsfirnntkn
ivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdl
agsgnttnigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwi
yrgrk

    Sequence, based on observed residues (ATOM records): (download) 
    >2b0dB (B:)
slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgy
iveepkqqnhypdftlykpsepnkkiaidikttytnkekikftlggytsfirnntknivy
pfdqyiahwiigyvytrvatslktyninelneipkpykgvkvflqdkwviagdlagsgnt
tnigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.