PDB entry 2az3

View 2az3 on RCSB PDB site
Description: Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum in complex with CDP
Class: transferase
Keywords: halophilic
Deposited on 2005-09-09, released 2005-12-20
The last revision prior to the SCOP 1.73 freeze date was dated 2005-12-20, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.203
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoside diphosphate kinase
    Species: Halobacterium salinarium
    Gene: ndk
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2az3a1
  • Chain 'B':
    Compound: Nucleoside diphosphate kinase
    Species: Halobacterium salinarium
    Gene: ndk
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2az3b1
  • Chain 'C':
    Compound: Nucleoside diphosphate kinase
    Species: Halobacterium salinarium
    Gene: ndk
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2az3c1
  • Chain 'D':
    Compound: Nucleoside diphosphate kinase
    Species: Halobacterium salinarium
    Gene: ndk
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2az3d1
  • Chain 'E':
    Compound: Nucleoside diphosphate kinase
    Species: Halobacterium salinarium
    Gene: ndk
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2az3e1
  • Chain 'F':
    Compound: Nucleoside diphosphate kinase
    Species: Halobacterium salinarium
    Gene: ndk
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2az3f1
  • Chain 'G':
    Compound: Nucleoside diphosphate kinase
    Species: Halobacterium salinarium
    Gene: ndk
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2az3g1
  • Chain 'H':
    Compound: Nucleoside diphosphate kinase
    Species: Halobacterium salinarium
    Gene: ndk
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2az3h1
  • Chain 'I':
    Compound: Nucleoside diphosphate kinase
    Species: Halobacterium salinarium
    Gene: ndk
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2az3i1
  • Heterogens: MG, CDP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2az3A (A:)
gshmtdhdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehe
dkpffdglvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnl
ihgsdhedeganereialffdddelvdwdrdasawvyedladhd

    Sequence, based on observed residues (ATOM records): (download) 
    >2az3A (A:)
hdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehedkpffd
glvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnlihgsdh
edeganereialffdddelvdwdrdasawvye

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2az3B (B:)
gshmtdhdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehe
dkpffdglvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnl
ihgsdhedeganereialffdddelvdwdrdasawvyedladhd

    Sequence, based on observed residues (ATOM records): (download) 
    >2az3B (B:)
dertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehedkpffdg
lvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnlihgsdhe
deganereialffdddelvdwdrdasawvye

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2az3C (C:)
gshmtdhdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehe
dkpffdglvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnl
ihgsdhedeganereialffdddelvdwdrdasawvyedladhd

    Sequence, based on observed residues (ATOM records): (download) 
    >2az3C (C:)
hdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehedkpffd
glvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnlihgsdh
edeganereialffdddelvdwdrdasawvyed

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2az3D (D:)
gshmtdhdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehe
dkpffdglvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnl
ihgsdhedeganereialffdddelvdwdrdasawvyedladhd

    Sequence, based on observed residues (ATOM records): (download) 
    >2az3D (D:)
hdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehedkpffd
glvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnlihgsdh
edeganereialffdddelvdwdrdasawvye

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2az3E (E:)
gshmtdhdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehe
dkpffdglvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnl
ihgsdhedeganereialffdddelvdwdrdasawvyedladhd

    Sequence, based on observed residues (ATOM records): (download) 
    >2az3E (E:)
hdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehedkpffd
glvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnlihgsdh
edeganereialffdddelvdwdrdasawvye

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2az3F (F:)
gshmtdhdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehe
dkpffdglvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnl
ihgsdhedeganereialffdddelvdwdrdasawvyedladhd

    Sequence, based on observed residues (ATOM records): (download) 
    >2az3F (F:)
hdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehedkpffd
glvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnlihgsdh
edeganereialffdddelvdwdrdasawvye

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2az3G (G:)
gshmtdhdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehe
dkpffdglvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnl
ihgsdhedeganereialffdddelvdwdrdasawvyedladhd

    Sequence, based on observed residues (ATOM records): (download) 
    >2az3G (G:)
hdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehedkpffd
glvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnlihgsdh
edeganereialffdddelvdwdrdasawvye

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2az3H (H:)
gshmtdhdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehe
dkpffdglvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnl
ihgsdhedeganereialffdddelvdwdrdasawvyedladhd

    Sequence, based on observed residues (ATOM records): (download) 
    >2az3H (H:)
hdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehedkpffd
glvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnlihgsdh
edeganereialffdddelvdwdrdasawvye

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >2az3I (I:)
gshmtdhdertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehe
dkpffdglvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnl
ihgsdhedeganereialffdddelvdwdrdasawvyedladhd

    Sequence, based on observed residues (ATOM records): (download) 
    >2az3I (I:)
dertfvmvkpdgvqrgligdivtrletkglkmvggkfmrideelahehyaehedkpffdg
lvsfitsgpvfamvwegadatrqvrqlmgatdaqdaapgtirgdygndlghnlihgsdhe
deganereialffdddelvdwdrdasawvye