PDB entry 2awb

View 2awb on RCSB PDB site
Description: Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 50S subunit of the second 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.
Class: ribosome
Keywords: RNA-protein complex, 50S RIBOSOMAL SUBUNIT
Deposited on 2005-08-31, released 2005-11-08
The last revision prior to the SCOP 1.73 freeze date was dated 2005-11-08, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 3.46 Å
R-factor: 0.279
AEROSPACI score: 0.01 (click here for full SPACI score report)

Chains and heterogens:

• Chain '0':
  Compound: 50S ribosomal protein L32
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7N4 (0-55)
  Domains in SCOP 1.73: d2awb01
• Chain '1':
  Compound: 50S ribosomal protein L33
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7N9 (0-53)
  Domains in SCOP 1.73: d2awb11
• Chain '2':
  Compound: 50S ribosomal protein L34
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7P5 (0-45)
  Domains in SCOP 1.73: d2awb21
• Chain '3':
  Compound: 50S ribosomal protein L35
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7Q1 (0-63)
  Domains in SCOP 1.73: d2awb31
• Chain '4':
  Compound: 50S ribosomal protein L36
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7Q6 (0-37)
  Domains in SCOP 1.73: d2awb41
• Chain 'A':
  Compound: 5S ribosomal RNA
  Species: Escherichia coli
  
• Chain 'B':
  Compound: 23S ribosomal RNA
  Species: Escherichia coli
  
• Chain 'C':
  Compound: 50S ribosomal protein L2
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P60422
• Chain 'D':
  Compound: 50S ribosomal protein L3
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P60438 (0-208)
• Chain 'E':
  Compound: 50S ribosomal protein L4
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P60723 (0-200)
• Chain 'F':
  Compound: 50S ribosomal protein L5
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62399 (0-177)
• Chain 'G':
  Compound: 50S ribosomal protein L6
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P02390 (0-175)
• Chain 'H':
  Compound: 50S ribosomal protein L9
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7R1 (0-148)
• Chain 'I':
  Compound: 50S ribosomal protein L11
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7J7 (0-140)
• Chain 'J':
  Compound: 50S ribosomal protein L13
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P02410 (0-End)
• Chain 'K':
  Compound: 50S ribosomal protein L14
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P02411
• Chain 'L':
  Compound: 50S ribosomal protein L15
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P02413 (0-143)
  Domains in SCOP 1.73: d2awbl1
• Chain 'M':
  Compound: 50S ribosomal protein L16
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P02414 (0-135)
  Domains in SCOP 1.73: d2awbm1
• Chain 'N':
  Compound: 50S ribosomal protein L17
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P02416 (0-126)
• Chain 'O':
  Compound: 50S ribosomal protein L18
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0C018 (0-116)
• Chain 'P':
  Compound: 50S ribosomal protein L19
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7K6 (0-113)
  Domains in SCOP 1.73: d2awbp1
• Chain 'Q':
  Compound: 50S ribosomal protein L20
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7L3 (0-116)
• Chain 'R':
  Compound: 50S ribosomal protein L21
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P02422 (0-102)
  Domains in SCOP 1.73: d2awbr1
• Chain 'S':
  Compound: 50S ribosomal protein L22
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P61175 (0-109)
• Chain 'T':
  Compound: 50S ribosomal protein L23
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P02424 (0-End)
• Chain 'U':
  Compound: 50S ribosomal protein L24
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P60624 (0-End)
  Domains in SCOP 1.73: d2awbu1
• Chain 'V':
  Compound: 50S ribosomal protein L25
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P68919 (0-93)
  Domains in SCOP 1.73: d2awbv1
• Chain 'W':
  Compound: 50S ribosomal protein L27
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7L8 (0-83)
• Chain 'X':
  Compound: 50S ribosomal protein L29
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7M6 (0-62)
  Domains in SCOP 1.73: d2awbx1
• Chain 'Y':
  Compound: 50S ribosomal protein L30
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P02430 (0-57)
• Chain 'Z':
  Compound: 50S ribosomal protein L31
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7M9 (0-69)
  Domains in SCOP 1.73: d2awbz1
• Heterogens: MG, HOH

PDB Chain Sequences:

• Chain '0':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2awb0 (0:)
  avqqnkptrskrgmrrshdaltavtslsvdktsgekhlrhhitadgyyrgrkviak
  

  
  
• Chain '1':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2awb1 (1:)
  akgirekiklvssagtghfytttknkrtkpeklelkkfdpvvrqhviykeakik
  

  
  
• Chain '2':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2awb2 (2:)
  mkrtfqpsvlkrnrshgfrarmatkngrqvlarrrakgrarltvsk
  

  
  
• Chain '3':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2awb3 (3:)
  pkiktvrgaakrfkktgkggfkhkhanlrhiltkkatkrkrhlrpkamvskgdlglviac
  lpya
  

  
  
• Chain '4':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2awb4 (4:)
  mkvrasvkklcrnckivkrdgvirvicsaepkhkqrqg
  

  
  
• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  No sequence available.
  
  
• Chain 'J':
  No sequence available.
  
  
• Chain 'K':
  No sequence available.
  
  
• Chain 'L':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2awbL (L:)
  mrlntlspaegskkagkrlgrgigsglgktggrghkgqksrsgggvrrgfeggqmplyrr
  lpkfgftsrkaaitaeirlsdlakveggvvdlntlkaaniigiqiefakvilagevttpv
  tvrglrvtkgaraaieaaggkiee
  

  
  
• Chain 'M':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2awbM (M:)
  mlqpkrtkfrkmhkgrnrglaqgtdvsfgsfglkavgrgrltarqieaarramtravkrq
  gkiwirvfpdkpitekplavrmgkgkgnveywvaliqpgkvlyemdgvpeelareafkla
  aaklpikttfvtktvm
  

  
  
• Chain 'N':
  No sequence available.
  
  
• Chain 'O':
  No sequence available.
  
  
• Chain 'P':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2awbP (P:)
  sniikqleqeqmkqdvpsfrpgdtvevkvwvvegskkrlqafegvviairnrglhsaftv
  rkisngegvervfqthspvvdsisvkrrgavrkaklyylrertgkaarikerln
  

  
  
• Chain 'Q':
  No sequence available.
  
  
• Chain 'R':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2awbR (R:)
  myavfqsggkqhrvsegqtvrlekldiatgetvefaevlmiangeevkigvpfvdggvik
  aevvahgrgekvkivkfrrrkhyrkqqghrqwftdvkitgisa
  

  
  
• Chain 'S':
  No sequence available.
  
  
• Chain 'T':
  No sequence available.
  
  
• Chain 'U':
  Sequence, based on SEQRES records: (download)
  

  >2awbU (U:)
  aakirrddevivltgkdkgkrgkvknvlssgkviveginlvkkhqkpvpalnqpggivek
  eaaiqvsnvaifnaatgkadrvgfrfedgkkvrffksnsetik
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >2awbU (U:)
  aakirrddevivltgkdkgkrgkvknvlssgkviveginlvkkhqkpvpalnqpggivek
  eaaiqvsnvaifnaatgkadrvgfrfedgkkvrffksnseti
  

  
  
• Chain 'V':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2awbV (V:)
  mftinaevrkeqgkgasrrlraankfpaiiyggkeaplaieldhdkvmnmqakaefysev
  ltivvdgkeikvkaqdvqrhpykpklqhidfvra
  

  
  
• Chain 'W':
  No sequence available.
  
  
• Chain 'X':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2awbX (X:)
  mkakelreksveelntellnllreqfnlrmqaasgqlqqshllkqvrrdvarvktllnek
  aga
  

  
  
• Chain 'Y':
  No sequence available.
  
  
• Chain 'Z':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2awbZ (Z:)
  mkkdihpkyeeitascscgnvmkirstvghdlnldvcskchpfftgkqrdvatggrvdrf
  nkrfnipgsk