PDB entry 2avy

View 2avy on RCSB PDB site
Description: Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.
Class: ribosome
Keywords: RNA-protein complex, 30S RIBOSOMAL SUBUNIT
Deposited on 2005-08-30, released 2005-11-08
The last revision prior to the SCOP 1.75 freeze date was dated 2005-11-08, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 3.46 Å
R-factor: 0.279
AEROSPACI score: 0.02 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 16S ribosomal RNA
    Species: Escherichia coli
  • Chain 'B':
    Compound: 30S ribosomal protein S2
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyb1
  • Chain 'C':
    Compound: 30S ribosomal protein S3
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyc1, d2avyc2
  • Chain 'D':
    Compound: 30S ribosomal protein S4
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyd1
  • Chain 'E':
    Compound: 30S ribosomal protein S5
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avye1, d2avye2
  • Chain 'F':
    Compound: 30S ribosomal protein S6
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyf1
  • Chain 'G':
    Compound: 30S ribosomal protein S7
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyg1
  • Chain 'H':
    Compound: 30S ribosomal protein S8
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyh1
  • Chain 'I':
    Compound: 30S ribosomal protein S9
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyi1
  • Chain 'J':
    Compound: 30S ribosomal protein S10
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyj1
  • Chain 'K':
    Compound: 30S ribosomal protein S11
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyk1
  • Chain 'L':
    Compound: 30S ribosomal protein S12
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyl1
  • Chain 'M':
    Compound: 30S ribosomal protein S13
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avym1
  • Chain 'N':
    Compound: 30S ribosomal protein S14
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyn1
  • Chain 'O':
    Compound: 30S ribosomal protein S15
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyo1
  • Chain 'P':
    Compound: 30S ribosomal protein S16
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyp1
  • Chain 'Q':
    Compound: 30S ribosomal protein S17
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyq1
  • Chain 'R':
    Compound: 30S ribosomal protein S18
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyr1
  • Chain 'S':
    Compound: 30S ribosomal protein S19
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avys1
  • Chain 'T':
    Compound: 30S ribosomal protein S20
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyt1
  • Chain 'U':
    Compound: 30S ribosomal protein S21
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2avyu1
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2avyB (B:)
atvsmrdmlkagvhfghqtrywnpkmkpfifgarnkvhiinlektvpmfnealaelnkia
srkgkilfvgtkraaseavkdaalscdqffvnhrwlggmltnwktvrqsikrlkdletqs
qdgtfdkltkkealmrtreleklenslggikdmgglpdalfvidadhehiaikeannlgi
pvfaivdtnsdpdgvdfvipgnddairavtlylgavaatvregrsqdlasqaeesfveae

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyB (B:)
mlkagvhfghqtrywnpkmkpfifgarnkvhiinlektvpmfnealaelnkiasrkgkil
fvgtkraaseavkdaalscdqffvnhrwlggmltnwktvrqsikrlkdletqsqdgtfdk
ltkkealmrtreleklenslggikdmgglpdalfvidadhehiaikeannlgipvfaivd
tnsdpdgvdfvipgnddairavtlylgavaatvregrs

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2avyC (C:)
gqkvhpngirlgivkpwnstwfantkefadnldsdfkvrqyltkelakasvsrivierpa
ksirvtihtarpgivigkkgedveklrkvvadiagvpaqiniaevrkpeldaklvadsit
sqlerrvmfrramkravqnamrlgakgikvevsgrlggaeiartewyregrvplhtlrad
idyntseahttygvigvkvwifkgeilggmaaveqpekpaaqpkkqqrkgrk

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyC (C:)
gqkvhpngirlgivkpwnstwfantkefadnldsdfkvrqyltkelakasvsrivierpa
ksirvtihtarpgivigkkgedveklrkvvadiagvpaqiniaevrkpeldaklvadsit
sqlerrvmfrramkravqnamrlgakgikvevsgrlggaeiartewyregrvplhtlrad
idyntseahttygvigvkvwifkgei

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2avyD (D:)
arylgpklklsrregtdlflksgvraidtkckieqapgqhgarkprlsdygvqlrekqkv
rriygvlerqfrnyykeaarlkgntgenllallegrldnvvyrmgfgatraearqlvshk
aimvngrvvniasyqvspndvvsirekakkqsrvkaalelaeqrekptwlevdagkmegt
fkrkpersdlsadinehlivelysk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2avyE (E:)
ahiekqagelqekliavnrvsktvkggrifsftaltvvgdgngrvgfgygkarevpaaiq
kamekarrnminvalnngtlqhpvkgvhtgsrvfmqpasegtgiiaggamravlevagvh
nvlakaygstnpinvvratidglenmnspemvaakrgksveeilgk

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyE (E:)
elqekliavnrvsktvkggrifsftaltvvgdgngrvgfgygkarevpaaiqkamekarr
nminvalnngtlqhpvkgvhtgsrvfmqpasegtgiiaggamravlevagvhnvlakayg
stnpinvvratidglenmnspemvaakrgk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2avyF (F:)
mrhyeivfmvhpdqseqvpgmierytaaitgaegkihrledwgrrqlaypinklhkahyv
lmnveapqevidelettfrfndavirsmvmrtkhavteaspmvkakderrerrddfanet
addaeagdseeeeee

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyF (F:)
mrhyeivfmvhpdqseqvpgmierytaaitgaegkihrledwgrrqlaypinklhkahyv
lmnveapqevidelettfrfndavirsmvmrtkhavteas

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2avyG (G:)
prrrvigqrkilpdpkfgsellakfvnilmvdgkkstaesivysaletlaqrsgkselea
fevalenvrptvevksrrvggstyqvpvevrpvrrnalamrwiveaarkrgdksmalrla
nelsdaaenkgtavkkredvhrmaeankafahyrwlslrsfshqagasskqpalgyln

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyG (G:)
rrrvigqrkilpdpkfgsellakfvnilmvdgkkstaesivysaletlaqrsgkseleaf
evalenvrptvevksrrvggstyqvpvevrpvrrnalamrwiveaarkrgdksmalrlan
elsdaaenkgtavkkredvhrmaeankafa

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2avyH (H:)
smqdpiadmltrirngqaankaavtmpssklkvaianvlkeegfiedfkvegdtkpelel
tlkyfqgkavvesiqrvsrpglriykrkdelpkvmaglgiavvstskgvmtdraarqagl
ggeiicyva

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >2avyI (I:)
aenqyygtgrrkssaarvfikpgngkivinqrsleqyfgretarmvvrqplelvdmvekl
dlyitvkgggisgqagairhgitralmeydeslrselrkagfvtrdarqverkkvglrka
rrrpqfskr

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyI (I:)
nqyygtgrrkssaarvfikpgngkivinqrsleqyfgretarmvvrqplelvdmvekldl
yitvkgggisgqagairhgitralmeydeslrselrkagfvtrdarqverkkvglrkarr
rpqfskr

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >2avyJ (J:)
mqnqririrlkafdhrlidqataeivetakrtgaqvrgpiplptrkerftvlisphvnkd
ardqyeirthlrlvdiveptektvdalmrldlaagvdvqislg

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyJ (J:)
ririrlkafdhrlidqataeivetakrtgaqvrgpiplptrkerftvlisphvnkdardq
yeirthlrlvdiveptektvdalmrldlaagvdvqisl

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >2avyK (K:)
akapirarkrvrkqvsdgvahihasfnntivtitdrqgnalgwataggsgfrgsrkstpf
aaqvaaercadavkeygiknlevmvkgpgpgrestiralnaagfritnitdvtpiphngc
rppkkrrv

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyK (K:)
rkqvsdgvahihasfnntivtitdrqgnalgwataggsgfrgsrkstpfaaqvaaercad
avkeygiknlevmvkgpgpgrestiralnaagfritnitdvtpiphngcrppkkrrv

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2avyL (L:)
atvnqlvrkprarkvaksnvpaleacpqkrgvctrvytttpkkpnsalrkvcrvrltngf
evtsyiggeghnlqehsvilirggrvkdlpgvryhtvrgaldcsgvkdrkqarskygvkr
pka

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >2avyM (M:)
ariaginipdhkhavialtsiygvgktrskailaaagiaedvkiselsegqidtlrdeva
kfvvegdlrreismsikrlmdlgcyrglrhrrglpvrgqrtktnartrkgprkpikk

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyM (M:)
ariaginipdhkhavialtsiygvgktrskailaaagiaedvkiselsegqidtlrdeva
kfvvegdlrreismsikrlmdlgcyrglrhrrglpvrgqrtktnartrkgprkp

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >2avyN (N:)
akqsmkarevkrvaladkyfakraelkaiisdvnasdedrwnavlklqtlprdsspsrqr
nrcrqtgrphgflrkfglsrikvreaamrgeipglkkasw

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyN (N:)
akqsmkarevkrvaladkyfakraelkaiisdvnarwnavlklqtlprdsspsrqrnrcr
qtgrphgflrkfglsrikvreaamrgeipglkkasw

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >2avyO (O:)
mslsteatakivsefgrdandtgstevqvalltaqinhlqghfaehkkdhhsrrgllrmv
sqrrklldylkrkdvarytrlierlglrr

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyO (O:)
slsteatakivsefgrdandtgstevqvalltaqinhlqghfaehkkdhhsrrgllrmvs
qrrklldylkrkdvarytrlierlglrr

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2avyP (P:)
mvtirlarhgakkrpfyqvvvadsrnarngrfiervgffnpiasekeegtrldldriahw
vgqgatisdrvaalikevnkaa

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >2avyQ (Q:)
tdkirtlqgrvvsdkmeksivvaierfvkhpiygkfikrttklhvhdennecgigdvvei
recrplsktkswtlvrvvekavl

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyQ (Q:)
kirtlqgrvvsdkmeksivvaierfvkhpiygkfikrttklhvhdennecgigdvveire
crplsktkswtlvrvvekav

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >2avyR (R:)
aryfrrrkfcrftaegvqeidykdiatlknyitesgkivpsritgtrakyqrqlaraikr
arylsllpytdrhq

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyR (R:)
eidykdiatlknyitesgkivpsritgtrakyqrqlaraikrarylsllpytdrh

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >2avyS (S:)
prslkkgpfidlhllkkvekavesgdkkplrtwsrrstifpnmigltiavhngrqhvpvf
vtdemvghklgefaptrtyrghaadkkakkk

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyS (S:)
rslkkgpfidlhllkkvekavesgdkkplrtwsrrstifpnmigltiavhngrqhvpvfv
tdemvghklgefaptrtyr

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >2avyT (T:)
aniksakkraiqsekarkhnasrrsmmrtfikkvyaaieagdkaaaqkafnemqpivdrq
aakglihknkaarhkanltaqinkla

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyT (T:)
niksakkraiqsekarkhnasrrsmmrtfikkvyaaieagdkaaaqkafnemqpivdrqa
akglihknkaarhkanltaqinkla

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >2avyU (U:)
mpvikvrenepfdvalrrfkrscekagvlaevrrrefyekptterkrakasavkrhakkl
arenarrtrly

    Sequence, based on observed residues (ATOM records): (download) 
    >2avyU (U:)
ikvrenepfdvalrrfkrscekagvlaevrrrefyekptterkrakasavk