PDB entry 2avn

View 2avn on RCSB PDB site
Description: crystal structure of a ubiquinone/menaquinone biosynthesis methyltransferase-related protein (tm1389) from thermotoga maritima msb8 at 2.35 a resolution
Class: transferase
Keywords: ubiquinone/menaquinone biosynthesis methyltransferase-related protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, transferase
Deposited on 2005-08-30, released 2005-10-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.169
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ubiquinone/menaquinone biosynthesis methyltransferase-related protein
    Species: THERMOTOGA MARITIMA [TaxId:243274]
    Gene: tm1389
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X1A9 (12-End)
      • leader sequence (11)
      • modified residue (12)
      • modified residue (30)
      • modified residue (87)
      • modified residue (161)
      • modified residue (215)
    Domains in SCOPe 2.07: d2avna1, d2avna2
  • Chain 'B':
    Compound: ubiquinone/menaquinone biosynthesis methyltransferase-related protein
    Species: THERMOTOGA MARITIMA [TaxId:243274]
    Gene: tm1389
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X1A9 (12-End)
      • leader sequence (11)
      • modified residue (12)
      • modified residue (30)
      • modified residue (87)
      • modified residue (161)
      • modified residue (215)
    Domains in SCOPe 2.07: d2avnb2, d2avnb3
  • Heterogens: PO4, SAI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2avnA (A:)
mgsdkihhhhhhmklrswefydriaraydsmyetpkwklyhrligsfleeylknpcrvld
lgggtgkwslflqergfevvlvdpskemlevarekgvknvveakaedlpfpsgafeavla
lgdvlsyvenkdkafseirrvlvpdglliatvdnfytflqqmiekdawdqitrflktqtt
svgttlfsfnsyafkpedldslegfetvdirgigvmeypderisereetifrleqelsrd
rniiwkadhiffvlkkkrga

    Sequence, based on observed residues (ATOM records): (download) 
    >2avnA (A:)
hmklrswefydriaraydsmyetpkwklyhrligsfleeylknpcrvldlgggtgkwslf
lqergfevvlvdpskemlevarekgvknvveakaedlpfpsgafeavlalgdvlsyvenk
dkafseirrvlvpdglliatvdnfytflqqmiekdawdqitrflktqttsvgttlfsfns
yafkpedldslegfetvdirgigvmeypderisereetifrleqelsrdrniiwkadhif
fvlkkkr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2avnB (B:)
mgsdkihhhhhhmklrswefydriaraydsmyetpkwklyhrligsfleeylknpcrvld
lgggtgkwslflqergfevvlvdpskemlevarekgvknvveakaedlpfpsgafeavla
lgdvlsyvenkdkafseirrvlvpdglliatvdnfytflqqmiekdawdqitrflktqtt
svgttlfsfnsyafkpedldslegfetvdirgigvmeypderisereetifrleqelsrd
rniiwkadhiffvlkkkrga

    Sequence, based on observed residues (ATOM records): (download) 
    >2avnB (B:)
hmklrswefydriaraydsmyetpkwklyhrligsfleeylknpcrvldlgggtgkwslf
lqergfevvlvdpskemlevarekgvknvveakaedlpfpsgafeavlalgdvlsyvenk
dkafseirrvlvpdglliatvdnfytflqqmiekdawdqitrflktqttsvgttlfsfns
yafkpedldslegfetvdirgigvmeypderisereetifrleqelsrdrniiwkadhif
fvlkkkr