PDB entry 2avf

View 2avf on RCSB PDB site
Description: Crystal Structure of C-terminal Desundecapeptide Nitrite Reductase from Achromobacter cycloclastes
Class: oxidoreductase
Keywords: beta barrel trimer, oxidoreductase
Deposited on 2005-08-30, released 2005-12-20
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.182
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Copper-containing nitrite reductase
    Species: Achromobacter cycloclastes [TaxId:223]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2avfa1, d2avfa2
  • Chain 'B':
    Compound: Copper-containing nitrite reductase
    Species: Achromobacter cycloclastes [TaxId:223]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2avfb1, d2avfb2
  • Chain 'C':
    Compound: Copper-containing nitrite reductase
    Species: Achromobacter cycloclastes [TaxId:223]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2avfc1, d2avfc2
  • Chain 'D':
    Compound: Copper-containing nitrite reductase
    Species: Achromobacter cycloclastes [TaxId:223]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2avfd1, d2avfd2
  • Chain 'E':
    Compound: Copper-containing nitrite reductase
    Species: Achromobacter cycloclastes [TaxId:223]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2avfe1, d2avfe2
  • Chain 'F':
    Compound: Copper-containing nitrite reductase
    Species: Achromobacter cycloclastes [TaxId:223]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2avff1, d2avff2
  • Heterogens: CU, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2avfA (A:)
aagaapvdistlprvkvdlvkppfvhahdqvaktgprvveftmtieekklvidregteih
amtfngsvpgplmvvhendyvelrlinpdtntllhnidfhaatgalgggaltqvnpgeet
tlrfkatkpgvfvyhcapegmvpwhvtsgmngaimvlprdglkdekgqpltydkiyyvge
qdfyvpkdeagnykkyetpgeayedavkamrtltpthivfngavgaltgdhaltaavger
vlvvhsqanrdtrphligghgdyvwatgkfrnppdldqetwlipggtagaafytfrqpgv
yayvnhnlieafelgaaghfkvtgewndd

    Sequence, based on observed residues (ATOM records): (download) 
    >2avfA (A:)
lprvkvdlvkppfvhahdqvaktgprvveftmtieekklvidregteihamtfngsvpgp
lmvvhendyvelrlinpdtntllhnidfhaatgalgggaltqvnpgeettlrfkatkpgv
fvyhcapegmvpwhvtsgmngaimvlprdglkdekgqpltydkiyyvgeqdfyvpkdeag
nykkyetpgeayedavkamrtltpthivfngavgaltgdhaltaavgervlvvhsqanrd
trphligghgdyvwatgkfrnppdldqetwlipggtagaafytfrqpgvyayvnhnliea
felgaaghfkvtge

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2avfB (B:)
aagaapvdistlprvkvdlvkppfvhahdqvaktgprvveftmtieekklvidregteih
amtfngsvpgplmvvhendyvelrlinpdtntllhnidfhaatgalgggaltqvnpgeet
tlrfkatkpgvfvyhcapegmvpwhvtsgmngaimvlprdglkdekgqpltydkiyyvge
qdfyvpkdeagnykkyetpgeayedavkamrtltpthivfngavgaltgdhaltaavger
vlvvhsqanrdtrphligghgdyvwatgkfrnppdldqetwlipggtagaafytfrqpgv
yayvnhnlieafelgaaghfkvtgewndd

    Sequence, based on observed residues (ATOM records): (download) 
    >2avfB (B:)
tlprvkvdlvkppfvhahdqvaktgprvveftmtieekklvidregteihamtfngsvpg
plmvvhendyvelrlinpdtntllhnidfhaatgalgggaltqvnpgeettlrfkatkpg
vfvyhcapegmvpwhvtsgmngaimvlprdglkdekgqpltydkiyyvgeqdfyvpkdea
gnykkyetpgeayedavkamrtltpthivfngavgaltgdhaltaavgervlvvhsqanr
dtrphligghgdyvwatgkfrnppdldqetwlipggtagaafytfrqpgvyayvnhnlie
afelgaaghfkvtgew

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2avfC (C:)
aagaapvdistlprvkvdlvkppfvhahdqvaktgprvveftmtieekklvidregteih
amtfngsvpgplmvvhendyvelrlinpdtntllhnidfhaatgalgggaltqvnpgeet
tlrfkatkpgvfvyhcapegmvpwhvtsgmngaimvlprdglkdekgqpltydkiyyvge
qdfyvpkdeagnykkyetpgeayedavkamrtltpthivfngavgaltgdhaltaavger
vlvvhsqanrdtrphligghgdyvwatgkfrnppdldqetwlipggtagaafytfrqpgv
yayvnhnlieafelgaaghfkvtgewndd

    Sequence, based on observed residues (ATOM records): (download) 
    >2avfC (C:)
stlprvkvdlvkppfvhahdqvaktgprvveftmtieekklvidregteihamtfngsvp
gplmvvhendyvelrlinpdtntllhnidfhaatgalgggaltqvnpgeettlrfkatkp
gvfvyhcapegmvpwhvtsgmngaimvlprdglkdekgqpltydkiyyvgeqdfyvpkde
agnykkyetpgeayedavkamrtltpthivfngavgaltgdhaltaavgervlvvhsqan
rdtrphligghgdyvwatgkfrnppdldqetwlipggtagaafytfrqpgvyayvnhnli
eafelgaaghfkvtge

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2avfD (D:)
aagaapvdistlprvkvdlvkppfvhahdqvaktgprvveftmtieekklvidregteih
amtfngsvpgplmvvhendyvelrlinpdtntllhnidfhaatgalgggaltqvnpgeet
tlrfkatkpgvfvyhcapegmvpwhvtsgmngaimvlprdglkdekgqpltydkiyyvge
qdfyvpkdeagnykkyetpgeayedavkamrtltpthivfngavgaltgdhaltaavger
vlvvhsqanrdtrphligghgdyvwatgkfrnppdldqetwlipggtagaafytfrqpgv
yayvnhnlieafelgaaghfkvtgewndd

    Sequence, based on observed residues (ATOM records): (download) 
    >2avfD (D:)
apvdistlprvkvdlvkppfvhahdqvaktgprvveftmtieekklvidregteihamtf
ngsvpgplmvvhendyvelrlinpdtntllhnidfhaatgalgggaltqvnpgeettlrf
katkpgvfvyhcapegmvpwhvtsgmngaimvlprdglkdekgqpltydkiyyvgeqdfy
vpkdeagnykkyetpgeayedavkamrtltpthivfngavgaltgdhaltaavgervlvv
hsqanrdtrphligghgdyvwatgkfrnppdldqetwlipggtagaafytfrqpgvyayv
nhnlieafelgaaghfkvtg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2avfE (E:)
aagaapvdistlprvkvdlvkppfvhahdqvaktgprvveftmtieekklvidregteih
amtfngsvpgplmvvhendyvelrlinpdtntllhnidfhaatgalgggaltqvnpgeet
tlrfkatkpgvfvyhcapegmvpwhvtsgmngaimvlprdglkdekgqpltydkiyyvge
qdfyvpkdeagnykkyetpgeayedavkamrtltpthivfngavgaltgdhaltaavger
vlvvhsqanrdtrphligghgdyvwatgkfrnppdldqetwlipggtagaafytfrqpgv
yayvnhnlieafelgaaghfkvtgewndd

    Sequence, based on observed residues (ATOM records): (download) 
    >2avfE (E:)
stlprvkvdlvkppfvhahdqvaktgprvveftmtieekklvidregteihamtfngsvp
gplmvvhendyvelrlinpdtntllhnidfhaatgalgggaltqvnpgeettlrfkatkp
gvfvyhcapegmvpwhvtsgmngaimvlprdglkdekgqpltydkiyyvgeqdfyvpkde
agnykkyetpgeayedavkamrtltpthivfngavgaltgdhaltaavgervlvvhsqan
rdtrphligghgdyvwatgkfrnppdldqetwlipggtagaafytfrqpgvyayvnhnli
eafelgaaghfkvtg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2avfF (F:)
aagaapvdistlprvkvdlvkppfvhahdqvaktgprvveftmtieekklvidregteih
amtfngsvpgplmvvhendyvelrlinpdtntllhnidfhaatgalgggaltqvnpgeet
tlrfkatkpgvfvyhcapegmvpwhvtsgmngaimvlprdglkdekgqpltydkiyyvge
qdfyvpkdeagnykkyetpgeayedavkamrtltpthivfngavgaltgdhaltaavger
vlvvhsqanrdtrphligghgdyvwatgkfrnppdldqetwlipggtagaafytfrqpgv
yayvnhnlieafelgaaghfkvtgewndd

    Sequence, based on observed residues (ATOM records): (download) 
    >2avfF (F:)
apvdistlprvkvdlvkppfvhahdqvaktgprvveftmtieekklvidregteihamtf
ngsvpgplmvvhendyvelrlinpdtntllhnidfhaatgalgggaltqvnpgeettlrf
katkpgvfvyhcapegmvpwhvtsgmngaimvlprdglkdekgqpltydkiyyvgeqdfy
vpkdeagnykkyetpgeayedavkamrtltpthivfngavgaltgdhaltaavgervlvv
hsqanrdtrphligghgdyvwatgkfrnppdldqetwlipggtagaafytfrqpgvyayv
nhnlieafelgaaghfkvtgewn