PDB entry 2asj
View 2asj on RCSB PDB site
Description: oxoG-modified Preinsertion Binary Complex
Class: transferase/DNA
Keywords: DNA polymerase, 8-oxoguanine, Y-family, lesion bypass, transferase-DNA COMPLEX
Deposited on
2005-08-23, released
2006-01-10
The last revision prior to the SCOPe 2.07 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.249
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase IV
Species: Sulfolobus solfataricus [TaxId:2287]
Gene: dbh, dpo4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2asja1, d2asja2, d2asja3 - Chain 'B':
Compound: DNA polymerase IV
Species: Sulfolobus solfataricus [TaxId:2287]
Gene: dbh, dpo4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2asjb1, d2asjb2, d2asjb3 - Chain 'D':
Compound: 5'-d(*gp*gp*tp*tp*gp*gp*ap*tp*gp*gp*tp*ap*(ddg))-3'
- Chain 'E':
Compound: 5'-d(*cp*tp*ap*ap*cp*(8og)*cp*tp*ap*cp*cp*ap*tp*cp*cp*ap*ap*cp*c)-3'
- Chain 'H':
Compound: 5'-d(*gp*gp*tp*tp*gp*gp*ap*tp*gp*gp*tp*ap*(ddg))-3'
- Chain 'J':
Compound: 5'-d(*cp*tp*ap*ap*cp*(8og)*cp*tp*ap*cp*cp*ap*tp*cp*cp*ap*ap*cp*c)-3'
- Heterogens: CA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2asjA (A:)
gshmgggggivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyeark
fgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldis
dkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevk
rlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislarde
ynepirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavted
ldivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
Sequence, based on observed residues (ATOM records): (download)
>2asjA (A:)
givlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfi
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2asjB (B:)
gshmgggggivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyeark
fgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldis
dkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevk
rlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislarde
ynepirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavted
ldivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
Sequence, based on observed residues (ATOM records): (download)
>2asjB (B:)
givlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfi
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'J':
No sequence available.