PDB entry 2apo

View 2apo on RCSB PDB site
Description: Crystal Structure of the Methanococcus jannaschii Cbf5 Nop10 Complex
Class: Isomerase/RNA binding protein
Keywords: Protein-Protein complex, Box H/ACA, snoRNP, Pseudouridine synthase, RNA modification, Zinc ribbon, PUA domain
Deposited on 2005-08-16, released 2005-11-15
The last revision prior to the SCOP 1.73 freeze date was dated 2006-01-03, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.202
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Probable tRNA pseudouridine synthase B
    Species: Methanococcus jannaschii
    Gene: truB
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2apoa1, d2apoa2
  • Chain 'B':
    Compound: Ribosome biogenesis protein Nop10
    Species: Methanococcus jannaschii
    Gene: NOP10
    Database cross-references and differences (RAF-indexed):
    • Uniprot P81303
      • modified residue (3)
      • modified residue (5)
      • modified residue (47)
    Domains in SCOP 1.73: d2apob1
  • Heterogens: ZN, K, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2apoA (A:)
mghhhhhhhhhhssghiegrhmillektqekkindkeelivkeevetnwdygcnpyerki
edlikygvvvvdkprgptshevstwvkkilnldkaghggtldpkvtgvlpvaleratkti
pmwhippkeyvclmhlhrdaseedilrvfkeftgriyqrpplkaavkrrlrirkihelel
ldkdgkdvlfrvkcqsgtyirklcedigealgtsahmqelrrtksgcfeekdavylqdll
dayvfwkedgdeeelrrvikpmeyglrhlkkvvvkdsavdaichgadvyvrgiaklskgi
gkgetvlvetlkgeavavgkalmntkeilnadkgvavdvervymdrgtyprmwkrkk

    Sequence, based on observed residues (ATOM records): (download) 
    >2apoA (A:)
elivkeevetnwdygcnpyerkiedlikygvvvvdkprgptshevstwvkkilnldkagh
ggtldpkvtgvlpvaleratktipmwhippkeyvclmhlhrdaseedilrvfkeftgriy
qrrirkihelelldkdgkdvlfrvkcqsgtyirklcedigealgtsahmqelrrtksgcf
eekdavylqdlldayvfwkedgdeeelrrvikpmeyglrhlkkvvvkdsavdaichgadv
yvrgiaklskgigkgetvlvetlkgeavavgkalmntkeilnadkgvavdvervymdrgt
yprm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2apoB (B:)
mvemrmkkcpkcglytlkeicpkcgektvipkppkfsledrwgkyrrmlkralknknkae

    Sequence, based on observed residues (ATOM records): (download) 
    >2apoB (B:)
emrmkkcpkcglytlkeicpkcgektvipkppkfsledrwgkyrrmlkralknkn