PDB entry 2apo

View 2apo on RCSB PDB site
Description: Crystal Structure of the Methanococcus jannaschii Cbf5 Nop10 Complex
Class: Isomerase/RNA binding protein
Keywords: Protein-Protein complex, Box H/ACA, snoRNP, Pseudouridine synthase, RNA modification, Zinc ribbon, PUA domain, Isomerase/RNA binding protein COMPLEX
Deposited on 2005-08-16, released 2005-11-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.202
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Probable tRNA pseudouridine synthase B
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: truB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2apoa1, d2apoa2
  • Chain 'B':
    Compound: Ribosome biogenesis protein Nop10
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: NOP10
    Database cross-references and differences (RAF-indexed):
    • Uniprot P81303
      • modified residue (3)
      • modified residue (5)
      • modified residue (47)
    Domains in SCOPe 2.08: d2apob_
  • Heterogens: ZN, K, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2apoA (A:)
mghhhhhhhhhhssghiegrhmillektqekkindkeelivkeevetnwdygcnpyerki
edlikygvvvvdkprgptshevstwvkkilnldkaghggtldpkvtgvlpvaleratkti
pmwhippkeyvclmhlhrdaseedilrvfkeftgriyqrpplkaavkrrlrirkihelel
ldkdgkdvlfrvkcqsgtyirklcedigealgtsahmqelrrtksgcfeekdavylqdll
dayvfwkedgdeeelrrvikpmeyglrhlkkvvvkdsavdaichgadvyvrgiaklskgi
gkgetvlvetlkgeavavgkalmntkeilnadkgvavdvervymdrgtyprmwkrkk

    Sequence, based on observed residues (ATOM records): (download) 
    >2apoA (A:)
elivkeevetnwdygcnpyerkiedlikygvvvvdkprgptshevstwvkkilnldkagh
ggtldpkvtgvlpvaleratktipmwhippkeyvclmhlhrdaseedilrvfkeftgriy
qrrirkihelelldkdgkdvlfrvkcqsgtyirklcedigealgtsahmqelrrtksgcf
eekdavylqdlldayvfwkedgdeeelrrvikpmeyglrhlkkvvvkdsavdaichgadv
yvrgiaklskgigkgetvlvetlkgeavavgkalmntkeilnadkgvavdvervymdrgt
yprm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2apoB (B:)
mvemrmkkcpkcglytlkeicpkcgektvipkppkfsledrwgkyrrmlkralknknkae

    Sequence, based on observed residues (ATOM records): (download) 
    >2apoB (B:)
emrmkkcpkcglytlkeicpkcgektvipkppkfsledrwgkyrrmlkralknkn