PDB entry 2ahm

View 2ahm on RCSB PDB site
Description: Crystal structure of SARS-CoV super complex of non-structural proteins: the hexadecamer
Class: Viral protein, Replication
Keywords: SARS-CoV, coronavirus, non-structural protein, nsp7, nsp8, super-complex, hexadecamer, Viral protein, Replication
Deposited on 2005-07-28, released 2005-11-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.213
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Replicase polyprotein 1ab, light chain
    Species: SARS coronavirus [TaxId:227859]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P59641 (5-End)
      • cloning artifact (1-4)
    Domains in SCOPe 2.08: d2ahma1, d2ahma2
  • Chain 'B':
    Compound: Replicase polyprotein 1ab, light chain
    Species: SARS coronavirus [TaxId:227859]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P59641 (5-End)
      • cloning artifact (2-4)
    Domains in SCOPe 2.08: d2ahmb2, d2ahmb3
  • Chain 'C':
    Compound: Replicase polyprotein 1ab, light chain
    Species: SARS coronavirus [TaxId:227859]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P59641 (5-End)
      • cloning artifact (4)
    Domains in SCOPe 2.08: d2ahmc2, d2ahmc3
  • Chain 'D':
    Compound: Replicase polyprotein 1ab, light chain
    Species: SARS coronavirus [TaxId:227859]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P59641 (5-End)
      • cloning artifact (0-4)
    Domains in SCOPe 2.08: d2ahmd2, d2ahmd3
  • Chain 'E':
    Compound: Replicase polyprotein 1ab, heavy chain
    Species: SARS coronavirus [TaxId:227859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ahme1
  • Chain 'F':
    Compound: Replicase polyprotein 1ab, heavy chain
    Species: SARS coronavirus [TaxId:227859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ahmf_
  • Chain 'G':
    Compound: Replicase polyprotein 1ab, heavy chain
    Species: SARS coronavirus [TaxId:227859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ahmg1
  • Chain 'H':
    Compound: Replicase polyprotein 1ab, heavy chain
    Species: SARS coronavirus [TaxId:227859]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ahmh1
  • Heterogens: SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ahmA (A:)
gplgsskmsdvkctsvvllsvlqqlrvesssklwaqcvqlhndillakdtteafekmvsl
lsvllsmqgavdinrlceemldnratlq

    Sequence, based on observed residues (ATOM records): (download) 
    >2ahmA (A:)
plgsskmsdvkctsvvllsvlqqlrvesssklwaqcvqlhndillakdtteafekmvsll
svllsmqgavdinrlce

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ahmB (B:)
gplgsskmsdvkctsvvllsvlqqlrvesssklwaqcvqlhndillakdtteafekmvsl
lsvllsmqgavdinrlceemldnratlq

    Sequence, based on observed residues (ATOM records): (download) 
    >2ahmB (B:)
lgsskmsdvkctsvvllsvlqqlrvesssklwaqcvqlhndillakdtteafekmvslls
vllsmqgavdinrlcee

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2ahmC (C:)
gplgsskmsdvkctsvvllsvlqqlrvesssklwaqcvqlhndillakdtteafekmvsl
lsvllsmqgavdinrlceemldnratlq

    Sequence, based on observed residues (ATOM records): (download) 
    >2ahmC (C:)
sskmsdvkctsvvllsvlqqlrvesssklwaqcvqlhndillakdtteafekmvsllsvl
lsmqgavdinrlce

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2ahmD (D:)
gplgsskmsdvkctsvvllsvlqqlrvesssklwaqcvqlhndillakdtteafekmvsl
lsvllsmqgavdinrlceemldnratlq

    Sequence, based on observed residues (ATOM records): (download) 
    >2ahmD (D:)
gplgsskmsdvkctsvvllsvlqqlrvesssklwaqcvqlhndillakdtteafekmvsl
lsvllsmqgavdinrl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2ahmE (E:)
gplgsaiasefsslpsyaayataqeayeqavangdsevvlkklkkslnvaksefdrdaam
qrklekmadqamtqmykqarsedkrakvtsamqtmlftmlrkldndalnniinnardgcv
plniiplttaaklmvvvpdygtykntcdgntftyasalweiqqvvdadskivqlseinmd
nspnlawplivtalransavklq

    Sequence, based on observed residues (ATOM records): (download) 
    >2ahmE (E:)
lkkslnvaksefdrdaamqrklekmadqamtqmykqarsedkrakvtsamqtmlftmlrk
ldndalnniinnardgcvplniiplttaaklmvvvpdygtykntcdgntftyasalweiq
qvvdadskivqlseinmdnspnlawplivtalran

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2ahmF (F:)
gplgsaiasefsslpsyaayataqeayeqavangdsevvlkklkkslnvaksefdrdaam
qrklekmadqamtqmykqarsedkrakvtsamqtmlftmlrkldndalnniinnardgcv
plniiplttaaklmvvvpdygtykntcdgntftyasalweiqqvvdadskivqlseinmd
nspnlawplivtalransavklq

    Sequence, based on observed residues (ATOM records): (download) 
    >2ahmF (F:)
drdaamqrklekmadqamtqmykqarsedkrakvtsamqtmlftmlrkldndalnniinn
ardgcvplniiplttaaklmvvvpdygtykntcdgntftyasalweiqqvvdadskivql
seinmdnspnlawplivtalran

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2ahmG (G:)
gplgsaiasefsslpsyaayataqeayeqavangdsevvlkklkkslnvaksefdrdaam
qrklekmadqamtqmykqarsedkrakvtsamqtmlftmlrkldndalnniinnardgcv
plniiplttaaklmvvvpdygtykntcdgntftyasalweiqqvvdadskivqlseinmd
nspnlawplivtalransavklq

    Sequence, based on observed residues (ATOM records): (download) 
    >2ahmG (G:)
aiasefsslpsyaayataqeayeqavangdsevvlkklkkslnvaksefdrdaamqrkle
kmadqamtqmykqarsedkrakvtsamqtmlftmlrkldndalnniinnardgcvplnii
plttaaklmvvvpdygtykntcdgntftyasalweiqqvvdadskivqlseinmdnspnl
awplivtalra

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2ahmH (H:)
gplgsaiasefsslpsyaayataqeayeqavangdsevvlkklkkslnvaksefdrdaam
qrklekmadqamtqmykqarsedkrakvtsamqtmlftmlrkldndalnniinnardgcv
plniiplttaaklmvvvpdygtykntcdgntftyasalweiqqvvdadskivqlseinmd
nspnlawplivtalransavklq

    Sequence, based on observed residues (ATOM records): (download) 
    >2ahmH (H:)
iasefsslpsyaayataqeayeqavangdsevvlkklkkslnvaksefdrdaamqrklek
madqamtqmykqarsedkrakvtsamqtmlftmlrkldndalnniinnardgcvplniip
lttaaklmvvvpdygtykntcdgntftyasalweiqqvvdadskivqlseinmdnspnla
wplivtalran