PDB entry 2agd

View 2agd on RCSB PDB site
Description: Crystal Structure of Human M340H-Beta-1,4-Galactosyltransferase-I(M340H-B4Gal-T1) in Complex with GlcNAc-beta1,4-Man-alpha1,3-Man-beta-OR
Class: transferase
Keywords: beta1,4-Galactosyltransferase-I; Trisaccharide; closed conformation; Mutant, TRANSFERASE
Deposited on 2005-07-26, released 2005-10-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.202
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-1,4-galactosyltransferase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: B4GALT1, GGTB2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15291 (14-286)
      • engineered (225-226)
      • engineered (228)
    Domains in SCOPe 2.07: d2agda_
  • Chain 'B':
    Compound: Beta-1,4-galactosyltransferase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: B4GALT1, GGTB2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15291 (14-286)
      • engineered (225-226)
      • engineered (228)
    Domains in SCOPe 2.07: d2agdb_
  • Chain 'C':
    Compound: Beta-1,4-galactosyltransferase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: B4GALT1, GGTB2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15291 (14-286)
      • engineered (225-226)
      • engineered (228)
    Domains in SCOPe 2.07: d2agdc_
  • Heterogens: MN, SO4, UDH, DIO, MES, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2agdA (A:)
    asmtggqqmgrgsaslpacpeespllvgpmliefnmpvdlelvakqnpnvkmggryaprd
    cvsphkvaiiipfrnrqehlkywlyylhpvlqrqqldygiyvinqagdtifnrakllnvg
    fqealkdydytcfvfsdvdlipmndhnayrcfsqprhisvamdkfgfslpyvqyfggvsa
    lskqqfltingfpnnywgwggedddifnrlvfrgmsisrpnavvgttrhirhsrdkknep
    npqrfdriahtketmlsdglnsltyqvldvqryplytqitvdigtps
    

    Sequence, based on observed residues (ATOM records): (download)
    >2agdA (A:)
    slpacpeespllvgpmliefnmpvdlelvakqnpnvkmggryaprdcvsphkvaiiipfr
    nrqehlkywlyylhpvlqrqqldygiyvinqagdtifnrakllnvgfqealkdydytcfv
    fsdvdlipmndhnayrcfsqprhisvamdkfgfslpyvqyfggvsalskqqfltingfpn
    nywgwggedddifnrlvfrgmsisrpnavvgttrhirhsrdkknepnpqrfdriahtket
    mlsdglnsltyqvldvqryplytqitvdigtps
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2agdB (B:)
    asmtggqqmgrgsaslpacpeespllvgpmliefnmpvdlelvakqnpnvkmggryaprd
    cvsphkvaiiipfrnrqehlkywlyylhpvlqrqqldygiyvinqagdtifnrakllnvg
    fqealkdydytcfvfsdvdlipmndhnayrcfsqprhisvamdkfgfslpyvqyfggvsa
    lskqqfltingfpnnywgwggedddifnrlvfrgmsisrpnavvgttrhirhsrdkknep
    npqrfdriahtketmlsdglnsltyqvldvqryplytqitvdigtps
    

    Sequence, based on observed residues (ATOM records): (download)
    >2agdB (B:)
    slpacpeespllvgpmliefnmpvdlelvakqnpnvkmggryaprdcvsphkvaiiipfr
    nrqehlkywlyylhpvlqrqqldygiyvinqagdtifnrakllnvgfqealkdydytcfv
    fsdvdlipmndhnayrcfsqprhisvamdkfgfslpyvqyfggvsalskqqfltingfpn
    nywgwggedddifnrlvfrgmsisrpnavvgttrhirhsrdkknepnpqrfdriahtket
    mlsdglnsltyqvldvqryplytqitvdigtps
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2agdC (C:)
    asmtggqqmgrgsaslpacpeespllvgpmliefnmpvdlelvakqnpnvkmggryaprd
    cvsphkvaiiipfrnrqehlkywlyylhpvlqrqqldygiyvinqagdtifnrakllnvg
    fqealkdydytcfvfsdvdlipmndhnayrcfsqprhisvamdkfgfslpyvqyfggvsa
    lskqqfltingfpnnywgwggedddifnrlvfrgmsisrpnavvgttrhirhsrdkknep
    npqrfdriahtketmlsdglnsltyqvldvqryplytqitvdigtps
    

    Sequence, based on observed residues (ATOM records): (download)
    >2agdC (C:)
    slpacpeespllvgpmliefnmpvdlelvakqnpnvkmggryaprdcvsphkvaiiipfr
    nrqehlkywlyylhpvlqrqqldygiyvinqagdtifnrakllnvgfqealkdydytcfv
    fsdvdlipmndhnayrcfsqprhisvamdkfgfslpyvqyfggvsalskqqfltingfpn
    nywgwggedddifnrlvfrgmsisrpnavvgttrhirhsrdkknepnpqrfdriahtket
    mlsdglnsltyqvldvqryplytqitvdigtps