PDB entry 2af9

View 2af9 on RCSB PDB site
Description: Crystal Structure analysis of GM2-Activator protein complexed with phosphatidylcholine
Class: lipid binding protein
Keywords: lipid-protein complex, lipid acyl chain stacking
Deposited on 2005-07-25, released 2005-10-25
The last revision prior to the SCOP 1.73 freeze date was dated 2005-10-25, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.222
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ganglioside GM2 activator
    Species: HOMO SAPIENS
    Gene: GM2A
    Database cross-references and differences (RAF-indexed):
    • Uniprot P17900 (2-163)
      • cloning artifact (1)
    Domains in SCOP 1.73: d2af9a1
  • Heterogens: OLA, MYR, DAO, IPA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2af9A (A:)
hmssfswdncdegkdpavirsltlepdpivvpgnvtlsvvgstsvplssplkvdlvleke
vaglwikipctdyigsctfehfcdvldmliptgepcpeplrtyglpchcpfkegtyslpk
sefvvpdlelpswlttgnyriesvlsssgkrlgcikiaaslkgi

    Sequence, based on observed residues (ATOM records): (download) 
    >2af9A (A:)
mssfswdncdegkdpavirsltlepdpivvpgnvtlsvvgstsvplssplkvdlvlekev
aglwikipctdyigsctfehfcdvldmliptgepcpeplrtyglpchcpfkegtyslpks
efvvpdlelpswlttgnyriesvlsssgkrlgcikiaaslkgi