PDB entry 2acl

View 2acl on RCSB PDB site
Description: Liver X-Receptor alpha Ligand Binding Domain with SB313987
Class: transcription
Keywords: nuclear hormone receptor ligand binding domain transcription factor three layered a-helix fold
Deposited on 2005-07-19, released 2005-09-20
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.22
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Retinoic acid receptor RXR-alpha
    Species: Homo sapiens [TaxId:9606]
    Gene: RXRA, NR2B1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2acla_
  • Chain 'B':
    Compound: Oxysterols receptor LXR-alpha
    Species: Mus musculus [TaxId:10090]
    Gene: Nr1h3, Lxra
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Z0Y9 (1-End)
      • cloning artifact (0)
      • variant (197)
    Domains in SCOPe 2.01: d2aclb1
  • Chain 'C':
    Compound: Retinoic acid receptor RXR-alpha
    Species: Homo sapiens [TaxId:9606]
    Gene: RXRA, NR2B1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2aclc_
  • Chain 'D':
    Compound: Oxysterols receptor LXR-alpha
    Species: Mus musculus [TaxId:10090]
    Gene: Nr1h3, Lxra
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Z0Y9 (1-End)
      • cloning artifact (0)
      • variant (197)
    Domains in SCOPe 2.01: d2acld_
  • Chain 'E':
    Compound: Retinoic acid receptor RXR-alpha
    Species: Homo sapiens [TaxId:9606]
    Gene: RXRA, NR2B1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2acle_
  • Chain 'F':
    Compound: Oxysterols receptor LXR-alpha
    Species: Mus musculus [TaxId:10090]
    Gene: Nr1h3, Lxra
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Z0Y9 (1-End)
      • cloning artifact (0)
      • variant (197)
    Domains in SCOPe 2.01: d2aclf_
  • Chain 'G':
    Compound: Retinoic acid receptor RXR-alpha
    Species: Homo sapiens [TaxId:9606]
    Gene: RXRA, NR2B1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2aclg_
  • Chain 'H':
    Compound: Oxysterols receptor LXR-alpha
    Species: Mus musculus [TaxId:10090]
    Gene: Nr1h3, Lxra
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Z0Y9 (1-243)
      • cloning artifact (0)
      • variant (197)
    Domains in SCOPe 2.01: d2aclh_
  • Heterogens: L05, REA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2aclA (A:)
    sanedmpverileaelavepktetyveanmglnpsspndpvtnicqaadkqlftlvewak
    riphfselplddqvillragwnelliasfshrsiavkdgillatglhvhrnsahsagvga
    ifdrvltelvskmrdmqmdktelgclraivlfnpdskglsnpaevealrekvyasleayc
    khkypeqpgrfaklllrlpalrsiglkclehlfffkligdtpidtflmemleaphqmt
    

    Sequence, based on observed residues (ATOM records): (download)
    >2aclA (A:)
    sanedmpverileaelavedpvtnicqaadkqlftlvewakriphfselplddqvillra
    gwnelliasfshrsiavkdgillatglhvhrnsahsagvgaifdrvltelvskmrdmqmd
    ktelgclraivlfnpdskglsnpaevealrekvyasleayckhkypeqpgrfaklllrlp
    alrsiglkclehlfffkligdtpidtflmemlea
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2aclB (B:)
    vqlspeqlgmieklvaaqqqcnrrsfsdrlrvtpwpiapdpqsrearqqrfahftelaiv
    svqeivdfakqlpgflqlsredqiallktsaievmlletsrrynpgsesitflkdfsynr
    edfakaglqvefinpifefsramnelqlndaefalliaisifsadrpnvqdqlqverlqh
    tyvealhayvsinhphdplmfprmlmklvslrtlssvhseqvfalrlqdkklppllseiw
    dvhe
    

    Sequence, based on observed residues (ATOM records): (download)
    >2aclB (B:)
    vqlspeqlgmieklvaaqqqcnrrsfsdrlrvtpwpiapdpqsrearqqrfahftelaiv
    svqeivdfakqlpgflqlsredqiallktsaievmlletsrrynpgsesitflkdfsynr
    edfakaglqvefinpifefsramnelqlndaefalliaisifsadrpnvqdqlqverlqh
    tyvealhayvsinhphdplmfprmlmklvslrtlssvhseqvfalrlqdkklppllseiw
    dv
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2aclC (C:)
    sanedmpverileaelavepktetyveanmglnpsspndpvtnicqaadkqlftlvewak
    riphfselplddqvillragwnelliasfshrsiavkdgillatglhvhrnsahsagvga
    ifdrvltelvskmrdmqmdktelgclraivlfnpdskglsnpaevealrekvyasleayc
    khkypeqpgrfaklllrlpalrsiglkclehlfffkligdtpidtflmemleaphqmt
    

    Sequence, based on observed residues (ATOM records): (download)
    >2aclC (C:)
    sanedmpverileaelavedpvtnicqaadkqlftlvewakriphfselplddqvillra
    gwnelliasfshrsiavkdgillatglhvhrnsahsagvgaifdrvltelvskmrdmqmd
    ktelgclraivlfnpdskglsnpaevealrekvyasleayckhkypeqpgrfaklllrlp
    alrsiglkclehlfffkligdtpidtflmemleap
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2aclD (D:)
    vqlspeqlgmieklvaaqqqcnrrsfsdrlrvtpwpiapdpqsrearqqrfahftelaiv
    svqeivdfakqlpgflqlsredqiallktsaievmlletsrrynpgsesitflkdfsynr
    edfakaglqvefinpifefsramnelqlndaefalliaisifsadrpnvqdqlqverlqh
    tyvealhayvsinhphdplmfprmlmklvslrtlssvhseqvfalrlqdkklppllseiw
    dvhe
    

    Sequence, based on observed residues (ATOM records): (download)
    >2aclD (D:)
    vqlspeqlgmieklvaaqqqcnrrsfsdrlrvtpwpiapdpqsrearqqrfahftelaiv
    svqeivdfakqlpgflqlsredqiallktsaievmlletsrrynpgsesitflkdfsynr
    edfakaglqvefinpifefsramnelqlndaefalliaisifsadrpnvqdqlqverlqh
    tyvealhayvsinhphdplmfprmlmklvslrtlssvhseqvfalrlqdkklppllseiw
    dv
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >2aclE (E:)
    sanedmpverileaelavepktetyveanmglnpsspndpvtnicqaadkqlftlvewak
    riphfselplddqvillragwnelliasfshrsiavkdgillatglhvhrnsahsagvga
    ifdrvltelvskmrdmqmdktelgclraivlfnpdskglsnpaevealrekvyasleayc
    khkypeqpgrfaklllrlpalrsiglkclehlfffkligdtpidtflmemleaphqmt
    

    Sequence, based on observed residues (ATOM records): (download)
    >2aclE (E:)
    sanedmpverileaelavedpvtnicqaadkqlftlvewakriphfselplddqvillra
    gwnelliasfshrsiavkdgillatglhvhrnsahsagvgaifdrvltelvskmrdmqmd
    ktelgclraivlfnpdskglsnpaevealrekvyasleayckhkypeqpgrfaklllrlp
    alrsiglkclehlfffkligdtpidtflmemlea
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >2aclF (F:)
    vqlspeqlgmieklvaaqqqcnrrsfsdrlrvtpwpiapdpqsrearqqrfahftelaiv
    svqeivdfakqlpgflqlsredqiallktsaievmlletsrrynpgsesitflkdfsynr
    edfakaglqvefinpifefsramnelqlndaefalliaisifsadrpnvqdqlqverlqh
    tyvealhayvsinhphdplmfprmlmklvslrtlssvhseqvfalrlqdkklppllseiw
    dvhe
    

    Sequence, based on observed residues (ATOM records): (download)
    >2aclF (F:)
    vqlspeqlgmieklvaaqqqcnrrsfsdrlrvtpwpiapdpqsrearqqrfahftelaiv
    svqeivdfakqlpgflqlsredqiallktsaievmlletsrrynpgsesitflkdfsynr
    edfakaglqvefinpifefsramnelqlndaefalliaisifsadrpnvqdqlqverlqh
    tyvealhayvsinhphdplmfprmlmklvslrtlssvhseqvfalrlqdkklppllseiw
    dv
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >2aclG (G:)
    sanedmpverileaelavepktetyveanmglnpsspndpvtnicqaadkqlftlvewak
    riphfselplddqvillragwnelliasfshrsiavkdgillatglhvhrnsahsagvga
    ifdrvltelvskmrdmqmdktelgclraivlfnpdskglsnpaevealrekvyasleayc
    khkypeqpgrfaklllrlpalrsiglkclehlfffkligdtpidtflmemleaphqmt
    

    Sequence, based on observed residues (ATOM records): (download)
    >2aclG (G:)
    sanedmpverileaelavedpvtnicqaadkqlftlvewakriphfselplddqvillra
    gwnelliasfshrsiavkdgillatglhvhrnsahsagvgaifdrvltelvskmrdmqmd
    ktelgclraivlfnpdskglsnpaevealrekvyasleayckhkypeqpgrfaklllrlp
    alrsiglkclehlfffkligdtpidtflmemlea
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2aclH (H:)
    vqlspeqlgmieklvaaqqqcnrrsfsdrlrvtpwpiapdpqsrearqqrfahftelaiv
    svqeivdfakqlpgflqlsredqiallktsaievmlletsrrynpgsesitflkdfsynr
    edfakaglqvefinpifefsramnelqlndaefalliaisifsadrpnvqdqlqverlqh
    tyvealhayvsinhphdplmfprmlmklvslrtlssvhseqvfalrlqdkklppllseiw
    dvhe