PDB entry 2a9v

View 2a9v on RCSB PDB site
Description: Crystal structure of (np_394403.1) from THERMOPLASMA ACIDOPHILUM at 2.45 A resolution
Class: ligase
Keywords: np_394403.1, , Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI
Deposited on 2005-07-12, released 2005-08-02
The last revision prior to the SCOP 1.73 freeze date was dated 2005-08-02, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 2.24 Å
R-factor: 0.176
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: GMP synthase
    Species: Thermoplasma acidophilum
    Gene: guaAA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9HJM3 (12-End)
      • leader sequence (9-11)
      • modified residue (12)
      • modified residue (121)
    Domains in SCOP 1.73: d2a9va1
  • Chain 'B':
    Compound: GMP synthase
    Species: Thermoplasma acidophilum
    Gene: guaAA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9HJM3 (12-End)
      • modified residue (12)
      • modified residue (121)
    Domains in SCOP 1.73: d2a9vb1
  • Chain 'C':
    Compound: GMP synthase
    Species: Thermoplasma acidophilum
    Gene: guaAA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9HJM3 (12-End)
      • leader sequence (11)
      • modified residue (12)
      • modified residue (121)
    Domains in SCOP 1.73: d2a9vc1
  • Chain 'D':
    Compound: GMP synthase
    Species: Thermoplasma acidophilum
    Gene: guaAA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9HJM3 (12-End)
      • leader sequence (9-11)
      • modified residue (12)
      • modified residue (121)
    Domains in SCOP 1.73: d2a9vd1
  • Heterogens: CL, SCN, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2a9vA (A:)
mgsdkihhhhhhmlkiyvvdnggqwthrewrvlrelgvdtkivpndidsseldgldglvl
sggapnideeldklgsvgkyiddhnypilgicvgaqfialhfgasvvkakhpefgktkvs
vmhsenifgglpseitvwenhndeiinlpddftlaassatcqvqgfyhktrpiyatqfhp
evehtqygrdifrnfigicasyreiqkenfqh

    Sequence, based on observed residues (ATOM records): (download) 
    >2a9vA (A:)
hhhmlkiyvvdnggqwthrewrvlrelgvdtkivpndidsseldgldglvlsggapnide
eldklgsvgkyiddhnypilgicvgaqfialhfgasvvkakhpefgktkvsvmhsenifg
glpseitvwenhndeiinlpddftlaassatcqvqgfyhktrpiyatqfhpevehtqygr
difrnfigicasyreiqke

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2a9vB (B:)
mgsdkihhhhhhmlkiyvvdnggqwthrewrvlrelgvdtkivpndidsseldgldglvl
sggapnideeldklgsvgkyiddhnypilgicvgaqfialhfgasvvkakhpefgktkvs
vmhsenifgglpseitvwenhndeiinlpddftlaassatcqvqgfyhktrpiyatqfhp
evehtqygrdifrnfigicasyreiqkenfqh

    Sequence, based on observed residues (ATOM records): (download) 
    >2a9vB (B:)
mlkiyvvdnggqwthrewrvlrelgvdtkivpndidsseldgldglvlsggapnideeld
klgsvgkyiddhnypilgicvgaqfialhfgasvvkakhpefgktkvsvmhsenifgglp
seitvwenhndeiinlpddftlaassatcqvqgfyhktrpiyatqfhpevehtqygrdif
rnfigicasyreiqken

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2a9vC (C:)
mgsdkihhhhhhmlkiyvvdnggqwthrewrvlrelgvdtkivpndidsseldgldglvl
sggapnideeldklgsvgkyiddhnypilgicvgaqfialhfgasvvkakhpefgktkvs
vmhsenifgglpseitvwenhndeiinlpddftlaassatcqvqgfyhktrpiyatqfhp
evehtqygrdifrnfigicasyreiqkenfqh

    Sequence, based on observed residues (ATOM records): (download) 
    >2a9vC (C:)
hmlkiyvvdnggqwthrewrvlrelgvdtkivpndidsseldgldglvlsggapnideel
dklgsvgkyiddhnypilgicvgaqfialhfgasvvkakhpefgktkvsvmhsenifggl
pseitvwenhndeiinlpddftlaassatcqvqgfyhktrpiyatqfhpevehtqygrdi
frnfigicasyreiqkenf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2a9vD (D:)
mgsdkihhhhhhmlkiyvvdnggqwthrewrvlrelgvdtkivpndidsseldgldglvl
sggapnideeldklgsvgkyiddhnypilgicvgaqfialhfgasvvkakhpefgktkvs
vmhsenifgglpseitvwenhndeiinlpddftlaassatcqvqgfyhktrpiyatqfhp
evehtqygrdifrnfigicasyreiqkenfqh

    Sequence, based on observed residues (ATOM records): (download) 
    >2a9vD (D:)
hhhmlkiyvvdnggqwthrewrvlrelgvdtkivpndidsseldgldglvlsggapnide
eldklgsvgkyiddhnypilgicvgaqfialhfgasvvkakhpefgktkvsvmhsenifg
glpseitvwenhndeiinlpddftlaassatcqvqgfyhktrpiyatqfhpevehtqygr
difrnfigicasyreiqkenf