PDB entry 1zy1

View 1zy1 on RCSB PDB site
Description: X-ray structure of peptide deformylase from Arabidopsis thaliana (AtPDF1A) in complex with Met-Ala-Ser
Class: hydrolase
Keywords: peptide deformylase; PDF1A; eukaryote; higher plant; Arabidopsis thaliana; zinc ion, HYDROLASE
Deposited on 2005-06-09, released 2005-09-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.226
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptide deformylase, mitochondrial
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PDF1A
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9FV53 (1-189)
      • expression tag (190-191)
    Domains in SCOPe 2.08: d1zy1a1, d1zy1a2
  • Chain 'B':
    Compound: Peptide deformylase, mitochondrial
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PDF1A
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9FV53 (1-189)
      • expression tag (190-191)
    Domains in SCOPe 2.08: d1zy1b1, d1zy1b2
  • Chain 'D':
    Compound: tripeptide fragment
    Database cross-references and differences (RAF-indexed):
    • PDB 1ZY1 (0-2)
  • Chain 'E':
    Compound: tripeptide fragment
    Database cross-references and differences (RAF-indexed):
    • PDB 1ZY1 (0-2)
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1zy1A (A:)
mdlpeivasgdpvlhekarevdpgeigseriqkiiddmikvmrlapgvglaapqigvplr
iivledtkeyisyapkeeilaqerrhfdlmvmvnpvlkersnkkalffegclsvdgfraa
verylevvvtgydrqgkrievnasgwqarilqhecdhldgnlyvdkmvprtfrtvdnldl
plaegcpklgshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1zy1A (A:)
dlpeivasgdpvlhekarevdpgeigseriqkiiddmikvmrlapgvglaapqigvplri
ivledtkeyisyapkeeilaqerrhfdlmvmvnpvlkersnkkalffegclsvdgfraav
erylevvvtgydrqgkrievnasgwqarilqhecdhldgnlyvdkmvprtfrtvdnldlp
laegcpklgsh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1zy1B (B:)
mdlpeivasgdpvlhekarevdpgeigseriqkiiddmikvmrlapgvglaapqigvplr
iivledtkeyisyapkeeilaqerrhfdlmvmvnpvlkersnkkalffegclsvdgfraa
verylevvvtgydrqgkrievnasgwqarilqhecdhldgnlyvdkmvprtfrtvdnldl
plaegcpklgshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1zy1B (B:)
dlpeivasgdpvlhekarevdpgeigseriqkiiddmikvmrlapgvglaapqigvplri
ivledtkeyisyapkeeilaqerrhfdlmvmvnpvlkersnkkalffegclsvdgfraav
erylevvvtgydrqgkrievnasgwqarilqhecdhldgnlyvdkmvprtfrtvdnldlp
laegcpklgsh

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.