PDB entry 1zup

View 1zup on RCSB PDB site
Description: crystal structure of a putative nuclease with a ribonuclease h-like motif fold (tm1739) from thermotoga maritima at 2.20 a resolution
Class: hydrolase
Keywords: putative nuclease, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi, hydrolase
Deposited on 2005-05-31, released 2005-06-21
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.23
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hypothetical protein TM1739
    Species: Thermotoga maritima [TaxId:2336]
    Gene: tm1739
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X261 (12-End)
      • leader sequence (10-11)
      • modified residue (12)
      • modified residue (140)
      • modified residue (147)
      • modified residue (159)
      • modified residue (214)
      • modified residue (304)
    Domains in SCOPe 2.06: d1zupa1, d1zupa2
  • Chain 'B':
    Compound: hypothetical protein TM1739
    Species: Thermotoga maritima [TaxId:2336]
    Gene: tm1739
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X261
      • modified residue (140)
      • modified residue (147)
      • modified residue (159)
      • modified residue (214)
      • modified residue (304)
    Domains in SCOPe 2.06: d1zupb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1zupA (A:)
mgsdkihhhhhhmqvrieraerieseleehvgdqtfveesrfleedeqregeildqiifv
dgkrrsfvrittdegitgifaelcvgaviwdreggtktlfspdkppvkervlgfsqsfqe
egyeevggilfkvvkegkdamqsidlymrsleieevrkhmdknilivkdgpaarelpfee
nvgpiglvknigvtelskedfkklrflkkgkrskmfvssretplkkvgayvklidgegir
glvrletyvkddnqipyirkvfddlaktlphltadlpiprlpenilpiqfleenlsyylt
dknymntrlfayigr

    Sequence, based on observed residues (ATOM records): (download) 
    >1zupA (A:)
hhmqvrieraerieseleehvgdqtfveesrfleedeqregeildqiifvdgkrrsfvri
ttdegitgifaelcvgaviwdreggtktlfspdkppvkervlgfsqsfqeegyeevggil
fkvvkegkdamqsidlymrsleieevrkhmdknilivkdgpaarelpfeenvgpiglvkn
igvtelskedfkklrflkkgkrskmfvsslkkvgayvklidgegirglvrletyvkddnq
ipyirkvfddlaktlphltadlpnilpiqfleenlsyyltdknymntrlfayi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1zupB (B:)
mgsdkihhhhhhmqvrieraerieseleehvgdqtfveesrfleedeqregeildqiifv
dgkrrsfvrittdegitgifaelcvgaviwdreggtktlfspdkppvkervlgfsqsfqe
egyeevggilfkvvkegkdamqsidlymrsleieevrkhmdknilivkdgpaarelpfee
nvgpiglvknigvtelskedfkklrflkkgkrskmfvssretplkkvgayvklidgegir
glvrletyvkddnqipyirkvfddlaktlphltadlpiprlpenilpiqfleenlsyylt
dknymntrlfayigr

    Sequence, based on observed residues (ATOM records): (download) 
    >1zupB (B:)
rieraerieseleehvgdqtfveesrfleedeqregeildqiifvdgkrrsfvrittdeg
itgifaelcvgaviwdreggtktlfspdkppvkervlgfsqsfqeegyeevggilfkvvk
egkdamqsidlymrsleieevrkhmdknilivkdgpaarelpfeenvgpiglvknigvte
lskedfkklrflkkgkrskmfvskvgayvklidgegirglvrletyddnqipyirkvfdd
laktlphltadlplpenilpiqfleenlsyyltdknymntrlfayig