PDB entry 1zt7
View 1zt7 on RCSB PDB site
Description: crystal structure of class I MHC H-2Kk in complex with a nonapeptide
Class: immune system
Keywords: peptide binding groove, IMMUNE SYSTEM
Deposited on
2005-05-26, released
2005-10-18
The last revision prior to the SCOPe 2.02 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-11.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.235
AEROSPACI score: 0.18
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: H-2 class I histocompatibility antigen, K-K alpha chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1zt7a1, d1zt7a2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1zt7b1 - Chain 'C':
Compound: H-2 class I histocompatibility antigen, K-K alpha chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1zt7c1, d1zt7c2 - Chain 'D':
Compound: Beta-2-microglobulin
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1zt7d1 - Chain 'P':
Compound: SV40 epitope, SEFLLEKRI
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'Q':
Compound: SV40 epitope, SEFLLEKRI
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1zt7A (A:)
mgphslryfhtavsrpglgkprfisvgyvddtqfvrfdsdaenpryeprvrwmeqvepey
werntqiakgneqifrvnlrtalryynqsaggshtfqrmygcevgsdwrllrgyeqyayd
gcdyialnedlktwtaadmaalitkhkweqagdaerdraylegtcvewlrrylqlgnatl
prtdspkahvtrhsrpedkvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdg
tfqkwasvvvplgkeqyytchvyhqglpepltlrwe
Sequence, based on observed residues (ATOM records): (download)
>1zt7A (A:)
gphslryfhtavsrpglgkprfisvgyvddtqfvrfdsdaenpryeprvrwmeqvepeyw
erntqiakgneqifrvnlrtalryynqsaggshtfqrmygcevgsdwrllrgyeqyaydg
cdyialnedlktwtaadmaalitkhkweqagdaerdraylegtcvewlrrylqlgnatlp
rtdspkahvtrhsrpedkvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrwe
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1zt7B (B:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>1zt7B (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1zt7C (C:)
mgphslryfhtavsrpglgkprfisvgyvddtqfvrfdsdaenpryeprvrwmeqvepey
werntqiakgneqifrvnlrtalryynqsaggshtfqrmygcevgsdwrllrgyeqyayd
gcdyialnedlktwtaadmaalitkhkweqagdaerdraylegtcvewlrrylqlgnatl
prtdspkahvtrhsrpedkvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdg
tfqkwasvvvplgkeqyytchvyhqglpepltlrwe
Sequence, based on observed residues (ATOM records): (download)
>1zt7C (C:)
gphslryfhtavsrpglgkprfisvgyvddtqfvrfdsdaenpryeprvrwmeqvepeyw
erntqiakgneqifrvnlrtalryynqsaggshtfqrmygcevgsdwrllrgyeqyaydg
cdyialnedlktwtaadmaalitkhkweqagdaerdraylegtcvewlrrylqlgnatlp
rtdspkahvtrhsrpedkvtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrwe
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1zt7D (D:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>1zt7D (D:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm
- Chain 'P':
No sequence available.
- Chain 'Q':
No sequence available.