PDB entry 1zsd
View 1zsd on RCSB PDB site
Description: Crystal Structure Of HLA-B*3501 Presenting an 11-Mer EBV Antigen EPLPQGQLTAY
Class: immune system
Keywords: Human leukocyte antigen, major histocompatibility complex I, B35, B*3501, bulged peptide
Deposited on
2005-05-24, released
2005-06-07
The last revision prior to the SCOP 1.73 freeze date was dated
2005-09-27, with a file datestamp of
2007-06-28.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.219
AEROSPACI score: 0.52
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: HLA class I histocompatibility antigen, B-35 alpha chain
Species: HOMO SAPIENS
Gene: HLA-B, HLAB
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1zsda1, d1zsda2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: HOMO SAPIENS
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1zsdb1 - Chain 'C':
Compound: bzlf1 trans-activator protein
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1zsdA (A:)
gshsmryfytamsrpgrgeprfiavgyvddtqfvrfdsdaasprteprapwieqegpeyw
drntqifktntqtyreslrnlrgyynqseagshiiqrmygcdlgpdgrllrghdqsaydg
kdyialnedlsswtaadtaaqitqrkweaarvaeqlrayleglcvewlrrylengketlq
radppkthvthhpvsdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwep
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1zsdB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'C':
No sequence available.