PDB entry 1zsd

View 1zsd on RCSB PDB site
Description: Crystal Structure Of HLA-B*3501 Presenting an 11-Mer EBV Antigen EPLPQGQLTAY
Class: immune system
Keywords: Human leukocyte antigen, major histocompatibility complex I, B35, B*3501, bulged peptide
Deposited on 2005-05-24, released 2005-06-07
The last revision prior to the SCOP 1.73 freeze date was dated 2005-09-27, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.219
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class I histocompatibility antigen, B-35 alpha chain
    Species: HOMO SAPIENS
    Gene: HLA-B, HLAB
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1zsda1, d1zsda2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: HOMO SAPIENS
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1zsdb1
  • Chain 'C':
    Compound: bzlf1 trans-activator protein
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1zsdA (A:)
    gshsmryfytamsrpgrgeprfiavgyvddtqfvrfdsdaasprteprapwieqegpeyw
    drntqifktntqtyreslrnlrgyynqseagshiiqrmygcdlgpdgrllrghdqsaydg
    kdyialnedlsswtaadtaaqitqrkweaarvaeqlrayleglcvewlrrylengketlq
    radppkthvthhpvsdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
    fqkwaavvvpsgeeqrytchvqheglpkpltlrwep
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1zsdB (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    No sequence available.