PDB entry 1zs8

View 1zs8 on RCSB PDB site
Description: Crystal Structure of the Murine MHC Class Ib Molecule M10.5
Class: immune system
Keywords: major histocompatibility complex, MHC, vomeronasal organ, VNO, V2R receptors, pheromone receptors, beta-2-microglobulin, peptides, IMMUNE SYSTEM
Deposited on 2005-07-22, released 2005-07-26
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.307
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: histocompatibility 2, M region locus 10.5
    Species: Mus musculus [TaxId:10090]
    Gene: M10.5
    Database cross-references and differences (RAF-indexed):
    • GB NP_808302 (0-273)
    Domains in SCOPe 2.06: d1zs8a1, d1zs8a2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1zs8b_
  • Chain 'C':
    Compound: histocompatibility 2, M region locus 10.5
    Species: Mus musculus [TaxId:10090]
    Gene: M10.5
    Database cross-references and differences (RAF-indexed):
    • GB NP_808302 (0-273)
    Domains in SCOPe 2.06: d1zs8c1, d1zs8c2
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1zs8d_
  • Chain 'E':
    Compound: histocompatibility 2, M region locus 10.5
    Species: Mus musculus [TaxId:10090]
    Gene: M10.5
    Database cross-references and differences (RAF-indexed):
    • GB NP_808302 (0-273)
    Domains in SCOPe 2.06: d1zs8e1, d1zs8e2
  • Chain 'F':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1zs8f_
  • Chain 'G':
    Compound: histocompatibility 2, M region locus 10.5
    Species: Mus musculus [TaxId:10090]
    Gene: M10.5
    Database cross-references and differences (RAF-indexed):
    • GB NP_808302 (0-273)
    Domains in SCOPe 2.06: d1zs8g1, d1zs8g2
  • Chain 'H':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1zs8h_
  • Chain 'I':
    Compound: histocompatibility 2, M region locus 10.5
    Species: Mus musculus [TaxId:10090]
    Gene: M10.5
    Database cross-references and differences (RAF-indexed):
    • GB NP_808302 (0-273)
    Domains in SCOPe 2.06: d1zs8i1, d1zs8i2
  • Chain 'J':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1zs8j_
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1zs8A (A:)
    shwlktfrivimepgileprfiqvsyvdsiqyqgfdsrsetagmqpraawmkqeppeywk
    netehamgasllarrtliymvtennnkkndyhtlqevfgcnvahdgsflgghygltyygy
    dyiilnedlnswttegkvggkfnpdrtqgsvtegwrtylkgecterflrcldlgketllr
    sdaprthvthkvtpegnvtlrcwalgfypaditltwkrdgknhtqdmelpdtrpagdgtf
    qkwaavvvpfgeelrytchvhheglpgpltlkwg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1zs8A (A:)
    shwlktfrivimepgileprfiqvsyvdsiqyqgfdsrsgmqpraawmkqeppeywknet
    ehamgasllarrtliymvtennnkkndyhtlqevfgcnvahdgsflgghygltyygydyi
    ilnedlnswttegkvggkfnsvtegwrtylkgecterflrcldlgketllrsdaprthvt
    hkvtvtlrcwalgfypaditltwkrdgknhtqdmelpdtrpagdgtfqkwaavvvpfgee
    lrytchvhheglpgpltlkwg
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1zs8B (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1zs8C (C:)
    shwlktfrivimepgileprfiqvsyvdsiqyqgfdsrsetagmqpraawmkqeppeywk
    netehamgasllarrtliymvtennnkkndyhtlqevfgcnvahdgsflgghygltyygy
    dyiilnedlnswttegkvggkfnpdrtqgsvtegwrtylkgecterflrcldlgketllr
    sdaprthvthkvtpegnvtlrcwalgfypaditltwkrdgknhtqdmelpdtrpagdgtf
    qkwaavvvpfgeelrytchvhheglpgpltlkwg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1zs8C (C:)
    shwlktfrivimepgileprfiqvsyvdsiqyqgfdsrsgmqpraawmkqeppeywknet
    ehamgasllarrtliymvtennnkkndyhtlqevfgcnvahdgsflgghygltyygydyi
    ilnedlnswttegkvggkfnsvtegwrtylkgecterflrcldlgketllrsdaprthvt
    hkvtvtlrcwalgfypaditltwkrdgknhtqdmelpdtrpagdgtfqkwaavvvpfgee
    lrytchvhheglpgpltlkwg
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1zs8D (D:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >1zs8E (E:)
    shwlktfrivimepgileprfiqvsyvdsiqyqgfdsrsetagmqpraawmkqeppeywk
    netehamgasllarrtliymvtennnkkndyhtlqevfgcnvahdgsflgghygltyygy
    dyiilnedlnswttegkvggkfnpdrtqgsvtegwrtylkgecterflrcldlgketllr
    sdaprthvthkvtpegnvtlrcwalgfypaditltwkrdgknhtqdmelpdtrpagdgtf
    qkwaavvvpfgeelrytchvhheglpgpltlkwg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1zs8E (E:)
    shwlktfrivimepgileprfiqvsyvdsiqyqgfdsrsgmqpraawmkqeppeywknet
    ehamgasllarrtliymvtennnkkndyhtlqevfgcnvahdgsflgghygltyygydyi
    ilnedlnswttegkvggkfnsvtegwrtylkgecterflrcldlgketllrsdaprthvt
    hkvtvtlrcwalgfypaditltwkrdgknhtqdmelpdtrpagdgtfqkwaavvvpfgee
    lrytchvhheglpgpltlkwg
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1zs8F (F:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >1zs8G (G:)
    shwlktfrivimepgileprfiqvsyvdsiqyqgfdsrsetagmqpraawmkqeppeywk
    netehamgasllarrtliymvtennnkkndyhtlqevfgcnvahdgsflgghygltyygy
    dyiilnedlnswttegkvggkfnpdrtqgsvtegwrtylkgecterflrcldlgketllr
    sdaprthvthkvtpegnvtlrcwalgfypaditltwkrdgknhtqdmelpdtrpagdgtf
    qkwaavvvpfgeelrytchvhheglpgpltlkwg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1zs8G (G:)
    shwlktfrivimepgileprfiqvsyvdsiqyqgfdsrsgmqpraawmkqeppeywknet
    ehamgasllarrtliymvtennnkkndyhtlqevfgcnvahdgsflgghygltyygydyi
    ilnedlnswttegkvggkfnsvtegwrtylkgecterflrcldlgketllrsdaprthvt
    hkvtvtlrcwalgfypaditltwkrdgknhtqdmelpdtrpagdgtfqkwaavvvpfgee
    lrytchvhheglpgpltlkwg
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1zs8H (H:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >1zs8I (I:)
    shwlktfrivimepgileprfiqvsyvdsiqyqgfdsrsetagmqpraawmkqeppeywk
    netehamgasllarrtliymvtennnkkndyhtlqevfgcnvahdgsflgghygltyygy
    dyiilnedlnswttegkvggkfnpdrtqgsvtegwrtylkgecterflrcldlgketllr
    sdaprthvthkvtpegnvtlrcwalgfypaditltwkrdgknhtqdmelpdtrpagdgtf
    qkwaavvvpfgeelrytchvhheglpgpltlkwg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1zs8I (I:)
    shwlktfrivimepgileprfiqvsyvdsiqyqgfdsrsgmqpraawmkqeppeywknet
    ehamgasllarrtliymvtennnkkndyhtlqevfgcnvahdgsflgghygltyygydyi
    ilnedlnswttegkvggkfnsvtegwrtylkgecterflrcldlgketllrsdaprthvt
    hkvtvtlrcwalgfypaditltwkrdgknhtqdmelpdtrpagdgtfqkwaavvvpfgee
    lrytchvhheglpgpltlkwg
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1zs8J (J:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm