PDB entry 1zrd
View 1zrd on RCSB PDB site
Description: 4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6A;17T]ICAP38 DNA
Class: gene regulation/DNA
Keywords: protein-DNA complex, cap, cap-DNA, catabolite gene activator protein, camp receptor protein, crp, gene regulation-DNA complex
Deposited on
2005-05-19, released
2006-03-21
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-10-11, with a file datestamp of
2017-10-06.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.16
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Catabolite gene activator
Species: Escherichia coli [TaxId:562]
Gene: crp, cap, csm
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1zrda1, d1zrda2 - Chain 'B':
Compound: Catabolite gene activator
Species: Escherichia coli [TaxId:562]
Gene: crp, cap, csm
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1zrdb1, d1zrdb2 - Chain 'W':
Compound: 5'-d(*ap*tp*tp*tp*cp*gp*ap*ap*ap*ap*ap*tp*gp*ap*gp*ap*t)-3'
- Chain 'X':
Compound: 5'-d(*cp*tp*ap*gp*ap*tp*cp*tp*cp*ap*tp*tp*tp*tp*tp*cp*gp*ap*ap*ap*t)-3'
- Chain 'Y':
Compound: 5'-d(*ap*tp*tp*tp*cp*gp*ap*ap*ap*ap*ap*tp*gp*ap*gp*ap*t)-3'
- Chain 'Z':
Compound: 5'-d(*cp*tp*ap*gp*ap*tp*cp*tp*cp*ap*tp*tp*tp*tp*tp*cp*gp*ap*ap*ap*t)-3'
- Heterogens: CMP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1zrdA (A:)
vlgkpqtdptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemi
lsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqm
arrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsr
etvgrilkmledqnlisahgktivvygtr
Sequence, based on observed residues (ATOM records): (download)
>1zrdA (A:)
dptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqg
dfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvt
sekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsretvgril
kmledqnlisahgktivvyg
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1zrdB (B:)
vlgkpqtdptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemi
lsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqm
arrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsr
etvgrilkmledqnlisahgktivvygtr
Sequence, based on observed residues (ATOM records): (download)
>1zrdB (B:)
dptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqg
dfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvt
sekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsretvgril
kmledqnlisahgktivvyg
- Chain 'W':
No sequence available.
- Chain 'X':
No sequence available.
- Chain 'Y':
No sequence available.
- Chain 'Z':
No sequence available.