SCOPe 2.07: Structural Classification of Proteins

PDB entry 1zpd

View 1zpd on RCSB PDB site
Description: pyruvate decarboxylase from zymomonas mobilis
Class: alcohol fermentation
Keywords: alcohol fermentation, thiamin diphosphate, decarboxylase
Deposited on 1998-04-17, released 1999-02-02
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.86 Å
R-factor: 0.162
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: pyruvate decarboxylase
Species: Zymomonas mobilis [TaxId:542]
Database cross-references and differences (RAF-indexed):
- Uniprot P06672 (Start-565)
  - conflict (199)
  - conflict (232)
  - conflict (254-255)
  - conflict (340)
  - conflict (506)
Domains in SCOPe 2.07: d1zpda1, d1zpda2, d1zpda3
Chain 'B':
Compound: pyruvate decarboxylase
Species: Zymomonas mobilis [TaxId:542]
Database cross-references and differences (RAF-indexed):
- Uniprot P06672 (Start-565)
  - conflict (199)
  - conflict (232)
  - conflict (254-255)
  - conflict (340)
  - conflict (506)
Domains in SCOPe 2.07: d1zpdb1, d1zpdb2, d1zpdb3
Chain 'E':
Compound: pyruvate decarboxylase
Species: Zymomonas mobilis [TaxId:542]
Database cross-references and differences (RAF-indexed):
- Uniprot P06672 (Start-565)
  - conflict (199)
  - conflict (232)
  - conflict (254-255)
  - conflict (340)
  - conflict (506)
Domains in SCOPe 2.07: d1zpde1, d1zpde2, d1zpde3
Chain 'F':
Compound: pyruvate decarboxylase
Species: Zymomonas mobilis [TaxId:542]
Database cross-references and differences (RAF-indexed):
- Uniprot P06672 (Start-565)
  - conflict (199)
  - conflict (232)
  - conflict (254-255)
  - conflict (340)
  - conflict (506)
Domains in SCOPe 2.07: d1zpdf1, d1zpdf2, d1zpdf3
Heterogens: MG, DPX, CIT, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1zpdA (A:)
msytvgtylaerlvqiglkhhfavagdynlvlldnlllnknmeqvyccnelncgfsaegy
arakgaaaavvtysvgalsafdaiggayaenlpvilisgapnnndhaaghvlhhalgktd
yhyqlemaknitaaaeaiytpeeapakidhviktalrekkpvyleiacniasmpcaapgp
asalfndeasdeaslnaavdetlkfianrdkvavlvgsklraagaeeaavkftdalggav
atmaaaksffpeenalyigtswgevsypgvektmkeadavialapvfndysttgwtdipd
pkklvlaeprsvvvngirfpsvhlkdyltrlaqkvskktgsldffkslnagelkkaapad
psaplvnaeiarqvealltpnttviaetgdswfnaqrmklpngarveyemqwghigwsvp
aafgyavgaperrnilmvgdgsfqltaqevaqmvrlklpviiflinnygytievmihdgp
ynniknwdyaglmevfngnggydsgaakglkaktggelaeaikvalantdgptliecfig
redcteelvkwgkrvaaansrkpvnkvv

Sequence, based on observed residues (ATOM records): (download)

>1zpdA (A:)
sytvgtylaerlvqiglkhhfavagdynlvlldnlllnknmeqvyccnelncgfsaegya
rakgaaaavvtysvgalsafdaiggayaenlpvilisgapnnndhaaghvlhhalgktdy
hyqlemaknitaaaeaiytpeeapakidhviktalrekkpvyleiacniasmpcaapgpa
salfndeasdeaslnaavdetlkfianrdkvavlvgsklraagaeeaavkftdalggava
tmaaaksffpeenalyigtswgevsypgvektmkeadavialapvfndysttgwtdipdp
kklvlaeprsvvvngirfpsvhlkdyltrlaqkvskktgsldffkslnagelkkaapadp
saplvnaeiarqvealltpnttviaetgdswfnaqrmklpngarveyemqwghigwsvpa
afgyavgaperrnilmvgdgsfqltaqevaqmvrlklpviiflinnygytievmihdgpy
nniknwdyaglmevfngnggydsgaakglkaktggelaeaikvalantdgptliecfigr
edcteelvkwgkrvaaansrkpvnk

Chain 'B':
Sequence, based on SEQRES records: (download)

>1zpdB (B:)
msytvgtylaerlvqiglkhhfavagdynlvlldnlllnknmeqvyccnelncgfsaegy
arakgaaaavvtysvgalsafdaiggayaenlpvilisgapnnndhaaghvlhhalgktd
yhyqlemaknitaaaeaiytpeeapakidhviktalrekkpvyleiacniasmpcaapgp
asalfndeasdeaslnaavdetlkfianrdkvavlvgsklraagaeeaavkftdalggav
atmaaaksffpeenalyigtswgevsypgvektmkeadavialapvfndysttgwtdipd
pkklvlaeprsvvvngirfpsvhlkdyltrlaqkvskktgsldffkslnagelkkaapad
psaplvnaeiarqvealltpnttviaetgdswfnaqrmklpngarveyemqwghigwsvp
aafgyavgaperrnilmvgdgsfqltaqevaqmvrlklpviiflinnygytievmihdgp
ynniknwdyaglmevfngnggydsgaakglkaktggelaeaikvalantdgptliecfig
redcteelvkwgkrvaaansrkpvnkvv

Sequence, based on observed residues (ATOM records): (download)

>1zpdB (B:)
sytvgtylaerlvqiglkhhfavagdynlvlldnlllnknmeqvyccnelncgfsaegya
rakgaaaavvtysvgalsafdaiggayaenlpvilisgapnnndhaaghvlhhalgktdy
hyqlemaknitaaaeaiytpeeapakidhviktalrekkpvyleiacniasmpcaapgpa
salfndeasdeaslnaavdetlkfianrdkvavlvgsklraagaeeaavkftdalggava
tmaaaksffpeenalyigtswgevsypgvektmkeadavialapvfndysttgwtdipdp
kklvlaeprsvvvngirfpsvhlkdyltrlaqkvskktgsldffkslnagelkkaapadp
saplvnaeiarqvealltpnttviaetgdswfnaqrmklpngarveyemqwghigwsvpa
afgyavgaperrnilmvgdgsfqltaqevaqmvrlklpviiflinnygytievmihdgpy
nniknwdyaglmevfngnggydsgaakglkaktggelaeaikvalantdgptliecfigr
edcteelvkwgkrvaaansrkpvnk

Chain 'E':
Sequence, based on SEQRES records: (download)

>1zpdE (E:)
msytvgtylaerlvqiglkhhfavagdynlvlldnlllnknmeqvyccnelncgfsaegy
arakgaaaavvtysvgalsafdaiggayaenlpvilisgapnnndhaaghvlhhalgktd
yhyqlemaknitaaaeaiytpeeapakidhviktalrekkpvyleiacniasmpcaapgp
asalfndeasdeaslnaavdetlkfianrdkvavlvgsklraagaeeaavkftdalggav
atmaaaksffpeenalyigtswgevsypgvektmkeadavialapvfndysttgwtdipd
pkklvlaeprsvvvngirfpsvhlkdyltrlaqkvskktgsldffkslnagelkkaapad
psaplvnaeiarqvealltpnttviaetgdswfnaqrmklpngarveyemqwghigwsvp
aafgyavgaperrnilmvgdgsfqltaqevaqmvrlklpviiflinnygytievmihdgp
ynniknwdyaglmevfngnggydsgaakglkaktggelaeaikvalantdgptliecfig
redcteelvkwgkrvaaansrkpvnkvv

Sequence, based on observed residues (ATOM records): (download)

>1zpdE (E:)
sytvgtylaerlvqiglkhhfavagdynlvlldnlllnknmeqvyccnelncgfsaegya
rakgaaaavvtysvgalsafdaiggayaenlpvilisgapnnndhaaghvlhhalgktdy
hyqlemaknitaaaeaiytpeeapakidhviktalrekkpvyleiacniasmpcaapgpa
salfndeasdeaslnaavdetlkfianrdkvavlvgsklraagaeeaavkftdalggava
tmaaaksffpeenalyigtswgevsypgvektmkeadavialapvfndysttgwtdipdp
kklvlaeprsvvvngirfpsvhlkdyltrlaqkvskktgsldffkslnagelkkaapadp
saplvnaeiarqvealltpnttviaetgdswfnaqrmklpngarveyemqwghigwsvpa
afgyavgaperrnilmvgdgsfqltaqevaqmvrlklpviiflinnygytievmihdgpy
nniknwdyaglmevfngnggydsgaakglkaktggelaeaikvalantdgptliecfigr
edcteelvkwgkrvaaansrkpvnk

Chain 'F':
Sequence, based on SEQRES records: (download)

>1zpdF (F:)
msytvgtylaerlvqiglkhhfavagdynlvlldnlllnknmeqvyccnelncgfsaegy
arakgaaaavvtysvgalsafdaiggayaenlpvilisgapnnndhaaghvlhhalgktd
yhyqlemaknitaaaeaiytpeeapakidhviktalrekkpvyleiacniasmpcaapgp
asalfndeasdeaslnaavdetlkfianrdkvavlvgsklraagaeeaavkftdalggav
atmaaaksffpeenalyigtswgevsypgvektmkeadavialapvfndysttgwtdipd
pkklvlaeprsvvvngirfpsvhlkdyltrlaqkvskktgsldffkslnagelkkaapad
psaplvnaeiarqvealltpnttviaetgdswfnaqrmklpngarveyemqwghigwsvp
aafgyavgaperrnilmvgdgsfqltaqevaqmvrlklpviiflinnygytievmihdgp
ynniknwdyaglmevfngnggydsgaakglkaktggelaeaikvalantdgptliecfig
redcteelvkwgkrvaaansrkpvnkvv

Sequence, based on observed residues (ATOM records): (download)

>1zpdF (F:)
sytvgtylaerlvqiglkhhfavagdynlvlldnlllnknmeqvyccnelncgfsaegya
rakgaaaavvtysvgalsafdaiggayaenlpvilisgapnnndhaaghvlhhalgktdy
hyqlemaknitaaaeaiytpeeapakidhviktalrekkpvyleiacniasmpcaapgpa
salfndeasdeaslnaavdetlkfianrdkvavlvgsklraagaeeaavkftdalggava
tmaaaksffpeenalyigtswgevsypgvektmkeadavialapvfndysttgwtdipdp
kklvlaeprsvvvngirfpsvhlkdyltrlaqkvskktgsldffkslnagelkkaapadp
saplvnaeiarqvealltpnttviaetgdswfnaqrmklpngarveyemqwghigwsvpa
afgyavgaperrnilmvgdgsfqltaqevaqmvrlklpviiflinnygytievmihdgpy
nniknwdyaglmevfngnggydsgaakglkaktggelaeaikvalantdgptliecfigr
edcteelvkwgkrvaaansrkpvnk