PDB entry 1zl2

View 1zl2 on RCSB PDB site
Description: Crystal structure of the uridine phosphorylase from Salmonella typhimurium in complex with 2,2'-anhydrouridine and phosphate ion at 1.85A resolution
Class: transferase
Keywords: nucleoside phosphorylase, transferase
Deposited on 2005-05-05, released 2006-05-09
The last revision prior to the SCOPe 2.01 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: 0.178
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uridine phosphorylase
    Species: SALMONELLA TYPHIMURIUM [TaxId:99287]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1zl2a_
  • Chain 'B':
    Compound: Uridine phosphorylase
    Species: SALMONELLA TYPHIMURIUM [TaxId:99287]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1zl2b_
  • Chain 'C':
    Compound: Uridine phosphorylase
    Species: SALMONELLA TYPHIMURIUM [TaxId:99287]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1zl2c_
  • Chain 'D':
    Compound: Uridine phosphorylase
    Species: SALMONELLA TYPHIMURIUM [TaxId:99287]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1zl2d_
  • Chain 'E':
    Compound: Uridine phosphorylase
    Species: SALMONELLA TYPHIMURIUM [TaxId:99287]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1zl2e_
  • Chain 'F':
    Compound: Uridine phosphorylase
    Species: SALMONELLA TYPHIMURIUM [TaxId:99287]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1zl2f_
  • Heterogens: PO4, ANU, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1zl2A (A:)
msksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgk
avivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1zl2B (B:)
msksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgk
avivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >1zl2B (B:)
sdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgkavi
vcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslhf
apmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrfkgs
meewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnshavkivveaarr
ll

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1zl2C (C:)
msksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgk
avivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >1zl2C (C:)
ksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgkav
ivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslh
fapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrfkg
smeewqamgvmnyemesatlltmcasqglragmvagvivnrtqmkqteshavkivveaar
rll

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1zl2D (D:)
msksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgk
avivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >1zl2D (D:)
sdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgkavi
vcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslhf
apmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrfkgs
meewqamgvmnyemesatlltmcasqglragmvagvivnrtmkqteshavkivveaarrl
l

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1zl2E (E:)
msksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgk
avivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >1zl2E (E:)
ksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgkav
ivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslh
fapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrfkg
smeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqteshavkivveaarrl
l

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1zl2F (F:)
msksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgk
avivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgas
lhfapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrf
kgsmeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeipnaetmkqtesh
avkivveaarrll

    Sequence, based on observed residues (ATOM records): (download) 
    >1zl2F (F:)
ksdvfhlgltkndlqgaqlaivpgdpervekiaalmdkpvklashreftswraeldgkav
ivcstgiggpstsiaveelaqlgirtflrigttgaiqphinvgdvlvttasvrldgaslh
fapmefpavadfacttalveaaksigatthvgvtassdtfypgqerydtysgrvvrrfkg
smeewqamgvmnyemesatlltmcasqglragmvagvivnrtqqeshavkivveaarrll