PDB entry 1zhn
View 1zhn on RCSB PDB site
Description: Crystal Structure of mouse CD1d bound to the self ligand phosphatidylcholine
Class: immune system, membrane protein
Keywords: MHC fold; antigen binding domain; Ig fold
Deposited on
2005-04-26, released
2005-07-19
The last revision prior to the SCOP 1.73 freeze date was dated
2005-07-19, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.222
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: CD1d1 antigen
Species: MUS MUSCULUS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1zhna1, d1zhna2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: MUS MUSCULUS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1zhnb1 - Heterogens: NAG, PC6, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1zhnA (A:)
nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvafqgkyvv
rfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekq
ekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwy
lqatldveageeaglacrvkhsslggqdiilyw
Sequence, based on observed residues (ATOM records): (download)
>1zhnA (A:)
nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmspkeieiqlsagcemypgnasesflhvafqgkyvvrfw
gtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekqekp
vawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwylqa
tldveageeaglacrvkhsslggqdiilyw
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1zhnB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm