PDB entry 1zdk

View 1zdk on RCSB PDB site
Description: structure of bacteriophage coat protein-loop RNA complex
Class: Virus/RNA
Keywords: COMPLEX (COAT PROTEIN/RNA), COAT PROTEIN, RNA-BINDING, VIRAL PROTEIN CAPSID, RNA FRAGMENT, Icosahedral virus, Virus/RNA COMPLEX
Deposited on 1998-12-04, released 1998-12-07
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-19.
Experiment type: XRAY
Resolution: 2.86 Å
R-factor: 0.207
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (ms2 protein capsid)
    Species: Enterobacteria phage MS2 [TaxId:12022]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1zdka_
  • Chain 'B':
    Compound: protein (ms2 protein capsid)
    Species: Enterobacteria phage MS2 [TaxId:12022]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1zdkb_
  • Chain 'C':
    Compound: protein (ms2 protein capsid)
    Species: Enterobacteria phage MS2 [TaxId:12022]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1zdkc_
  • Chain 'R':
    Compound: RNA (5'-r(p*ap*cp*ap*up*gp*ap*gp*gp*ap*up*cp*ap*cp*cp*cp*ap*up*gp*u)-3')
    Species: synthetic, synthetic
  • Chain 'S':
    Compound: RNA (5'-r(p*ap*cp*ap*up*gp*ap*gp*gp*ap*up*cp*ap*cp*cp*cp*ap*up*gp*u)-3')
    Species: synthetic, synthetic
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1zdkA (A:)
asnftqfvlvdnggtgdvtvapsnfangvaewissnsrsqaykvtcsvrqssaqnrkyti
kvevpkvatqtvggvelpvaawrsylnmeltipifatnsdcelivkamqgllkdgnpips
aiaansgiy

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1zdkB (B:)
asnftqfvlvdnggtgdvtvapsnfangvaewissnsrsqaykvtcsvrqssaqnrkyti
kvevpkvatqtvggvelpvaawrsylnmeltipifatnsdcelivkamqgllkdgnpips
aiaansgiy

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1zdkC (C:)
asnftqfvlvdnggtgdvtvapsnfangvaewissnsrsqaykvtcsvrqssaqnrkyti
kvevpkvatqtvggvelpvaawrsylnmeltipifatnsdcelivkamqgllkdgnpips
aiaansgiy

  • Chain 'R':
    No sequence available.

  • Chain 'S':
    No sequence available.