PDB entry 1zcc
View 1zcc on RCSB PDB site
Description: Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens str.C58
Class: hydrolase
Keywords: NYSGXRC, T2047, Glycerophosphodiester phosphodiesterase, Agrobacterium tumefaciens str. C58, Structural Genomics, PSI, Protein Structure Initiative, New York Structural GenomiX Research Consortium
Deposited on
2005-04-11, released
2005-05-03
The last revision prior to the SCOP 1.75 freeze date was dated
2006-10-31, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.244
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: glycerophosphodiester phosphodiesterase
Species: Agrobacterium tumefaciens
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1zcca1 - Chain 'B':
Compound: glycerophosphodiester phosphodiesterase
Species: Agrobacterium tumefaciens
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: glycerophosphodiester phosphodiesterase
Species: Agrobacterium tumefaciens
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1zccc1 - Chain 'D':
Compound: glycerophosphodiester phosphodiesterase
Species: Agrobacterium tumefaciens
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: glycerophosphodiester phosphodiesterase
Species: Agrobacterium tumefaciens
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1zcce1 - Chain 'F':
Compound: glycerophosphodiester phosphodiesterase
Species: Agrobacterium tumefaciens
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1zccf1 - Heterogens: ACT, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1zccA (A:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsgmaelll
asnssstc
Sequence, based on observed residues (ATOM records): (download)
>1zccA (A:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsgmaelll
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1zccC (C:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsgmaelll
asnssstc
Sequence, based on observed residues (ATOM records): (download)
>1zccC (C:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfgaivprldaylehlrgragvyielkycdpakvaalv
rhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaqm
rrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsg
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence, based on SEQRES records: (download)
>1zccE (E:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsgmaelll
asnssstc
Sequence, based on observed residues (ATOM records): (download)
>1zccE (E:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrs
- Chain 'F':
Sequence, based on SEQRES records: (download)
>1zccF (F:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsgmaelll
asnssstc
Sequence, based on observed residues (ATOM records): (download)
>1zccF (F:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsgm