PDB entry 1zbd

View 1zbd on RCSB PDB site
Description: structural basis of rab effector specificity: crystal structure of the small g protein rab3a complexed with the effector domain of rabphilin-3a
Class: g protein
Keywords: g protein, effector, rabcdr, synaptic exocytosis, rab protein, rab3a, rabphilin
Deposited on 1998-11-06, released 1999-03-02
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.226
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: rabphilin-3a
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63012 (4-End)
      • conflict (7)
      • see remark 999 (66)
      • conflict (81)
      • conflict (86)
      • conflict (124)
      • conflict (172)
    Domains in SCOPe 2.01: d1zbda_
  • Chain 'B':
    Compound: rabphilin-3a
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P47709
      • conflict (27)
      • conflict (30)
      • conflict (45)
      • conflict (66)
      • see remark 999 (71)
      • conflict (130)
    Domains in SCOPe 2.01: d1zbdb_
  • Heterogens: ZN, MG, GTP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1zbdA (A:)
gshmfdymfkiliignssvgktsflfryaddsftpafvstvgidfkvktiyrndkriklq
iwdtagleryrtittayyrgamgfilmyditneesfnavqdwstqiktyswdnaqvllvg
nkcdmedervvssergrqladhlgfeffeasakdninvkqtferlvdvicekmsesldta
dpavtgakqgpqltdqqapphqd

    Sequence, based on observed residues (ATOM records): (download) 
    >1zbdA (A:)
shmfdymfkiliignssvgktsflfryaddsftpafvstvgidfkvktiyrndkriklqi
wdtagleryrtittayyrgamgfilmyditneesfnavqdwstqiktyswdnaqvllvgn
kcdmedervvssergrqladhlgfeffeasakdninvkqtferlvdvicekmsesld

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1zbdB (B:)
gshmrkqeeltdeekeiinrviaraekmetmeqerigrlvdrletmrknvagdgvnrcil
cgeqlgmlgsasvvcedckknvctkcgvetsnnrphpvwlckicleqrevwkrsgawffk
gfpkqvlpqpmpik

    Sequence, based on observed residues (ATOM records): (download) 
    >1zbdB (B:)
eeltdeekeiinrviaraekmetmeqerigrlvdrletmrknvagdgvnrcilcgeqlgm
lgsasvvcedckknvctkcgvetsnnrphpvwlckicleqrevwkrsgawffkgfpkqvl
pqpm