PDB entry 1z9d
View 1z9d on RCSB PDB site
Description: Crystal structure of a putative uridylate kinase (UMP-kinase) from Streptococcus pyogenes
Class: transferase
Keywords: Structural Genomics; Protein Structure Initiative; NYSGXRC; T1668; pyrH; putative uridylate kinase, UMP-kinase, PSI, New York SGX Research Center for Structural Genomics, TRANSFERASE
Deposited on
2005-04-01, released
2005-04-19
The last revision prior to the SCOPe 2.08 freeze date was dated
2021-02-03, with a file datestamp of
2021-01-29.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: uridylate kinase
Species: Streptococcus pyogenes [TaxId:1314]
Gene: pyrH
Database cross-references and differences (RAF-indexed):
- Uniprot P65938 (3-End)
- modified residue (68)
- modified residue (78)
- modified residue (83)
- modified residue (88)
- modified residue (107)
- modified residue (160)
- modified residue (198)
- modified residue (207)
- modified residue (218)
Domains in SCOPe 2.08: d1z9da1 - Chain 'B':
Compound: uridylate kinase
Species: Streptococcus pyogenes [TaxId:1314]
Gene: pyrH
Database cross-references and differences (RAF-indexed):
- Uniprot P65938 (3-End)
- modified residue (68)
- modified residue (78)
- modified residue (83)
- modified residue (88)
- modified residue (107)
- modified residue (160)
- modified residue (198)
- modified residue (207)
- modified residue (218)
Domains in SCOPe 2.08: d1z9db_ - Chain 'C':
Compound: uridylate kinase
Species: Streptococcus pyogenes [TaxId:1314]
Gene: pyrH
Database cross-references and differences (RAF-indexed):
- Uniprot P65938 (3-End)
- modified residue (68)
- modified residue (78)
- modified residue (83)
- modified residue (88)
- modified residue (107)
- modified residue (160)
- modified residue (198)
- modified residue (207)
- modified residue (218)
Domains in SCOPe 2.08: d1z9dc_ - Heterogens: SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1z9dA (A:)
mslepkyqriliklsgealagekgvgidiptvqaiakeiaevhvsgvqialvigggnlwr
gepaadagmdrvqadytgmlgtvmnalvmadslqhygvdtrvqtaipmqnvaepyirgra
lrhleknrivvfgagigspyfstdttaalraaeieadailmakngvdgvynadpkkdana
vkfdelthgevikrglkimdatastlsmdndidlvvfnmneagniqrvvfgehigttvsn
kvcdeghhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1z9dA (A:)
epkyqriliklsgealagekgvgidiptvqaiakeiaevhvsgvqialvigggnlwrgep
aadagmdrvqadytgmlgtvmnalvmadslqhygvdtrvqtaipmqnvaepyirgralrh
leknrivvfgagigspyfstdttaalraaeieadailmakngvdgvynadpkkdanavkf
delthgevikrglkimdatastlsmdndidlvvfnmneagniqrvvfgehigttvsnk
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1z9dB (B:)
mslepkyqriliklsgealagekgvgidiptvqaiakeiaevhvsgvqialvigggnlwr
gepaadagmdrvqadytgmlgtvmnalvmadslqhygvdtrvqtaipmqnvaepyirgra
lrhleknrivvfgagigspyfstdttaalraaeieadailmakngvdgvynadpkkdana
vkfdelthgevikrglkimdatastlsmdndidlvvfnmneagniqrvvfgehigttvsn
kvcdeghhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1z9dB (B:)
epkyqriliklsgealagekgvgidiptvqaiakeiaevhvsgvqialvigggnlwrgep
aadagmdrvqadytgmlgtvmnalvmadslqhygvdtrvqtaipmqnvaepyirgralrh
leknrivvfgagigspyfstdttaalraaeieadailmakngvdgvynadpkkdanavkf
delthgevikrglkimdatastlsmdndidlvvfnmneagniqrvvfgehigttvsnk
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1z9dC (C:)
mslepkyqriliklsgealagekgvgidiptvqaiakeiaevhvsgvqialvigggnlwr
gepaadagmdrvqadytgmlgtvmnalvmadslqhygvdtrvqtaipmqnvaepyirgra
lrhleknrivvfgagigspyfstdttaalraaeieadailmakngvdgvynadpkkdana
vkfdelthgevikrglkimdatastlsmdndidlvvfnmneagniqrvvfgehigttvsn
kvcdeghhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1z9dC (C:)
epkyqriliklsgealagekgvgidiptvqaiakeiaevhvsgvqialvigggnlwrgep
aadagmdrvqadytgmlgtvmnalvmadslqhygvdtrvqtaipmqnvaepyirgralrh
leknrivvfgagigspyfstdttaalraaeieadailmakngvdgvynadpkkdanavkf
delthgevikrglkimdatastlsmdndidlvvfnmneagniqrvvfgehigttvsnk