PDB entry 1z5s

View 1z5s on RCSB PDB site
Description: Crystal structure of a complex between UBC9, SUMO-1, RANGAP1 and NUP358/RANBP2
Class: ligase
Keywords: e3, ligase, sumo, ubc9, nuclear pore complex
Deposited on 2005-03-19, released 2005-06-07
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 3.01 Å
R-factor: 0.247
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin-conjugating enzyme E2 I
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2I, UBC9, UBCE9
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1z5sa1
  • Chain 'B':
    Compound: Ubiquitin-like protein SMT3C
    Species: Homo sapiens [TaxId:9606]
    Gene: UBL1, SMT3C, SMT3H3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1z5sb1
  • Chain 'C':
    Compound: ran gtpase-activating protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RANGAP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1z5sc1
  • Chain 'D':
    Compound: Ran-binding protein 2
    Species: Homo sapiens [TaxId:9606]
    Gene: RANBP2, NUP358
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49792 (2-End)
      • cloning artifact (0-1)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1z5sA (A:)
    msgialsrlaqerkawrkdhpfgfvavptknpdgtmnlmnwecaipgkkgtpwegglfkl
    rmlfkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillgiqell
    nepniqdpaqaeaytiycqnrveyekrvraqakkfaps
    

    Sequence, based on observed residues (ATOM records): (download)
    >1z5sA (A:)
    sgialsrlaqerkawrkdhpfgfvavptknpdgtmnlmnwecaipgkkgtpwegglfklr
    mlfkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillgiqelln
    epniqdpaqaeaytiycqnrveyekrvraqakkfap
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1z5sB (B:)
    mgegeyiklkvigqdsseihfkvkmtthlkklkesycqrqgvpmnslrflfegqriadnh
    tpkelgmeeedvievyqeqtgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1z5sB (B:)
    eyiklkvigqdsseihfkvkmtthlkklkesycqrqgvpmnslrflfegqriadnhtpke
    lgmeeedvievyqeqtgg
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1z5sC (C:)
    slntgepapvlsspppadvstflafpspekllrlgpkssvliaqqtdtsdpekvvsaflk
    vssvfkdeatvrmavqdavdalmqkafnsssfnsntfltrllvhmgllksedkvkaianl
    ygplmalnhmvqqdyfpkalaplllafvtkpnsalescsfarhsllqtlykv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1z5sC (C:)
    advstflafpspekllrlgpkssvliaqqtdtsdpekvvsaflkvssvfkdeatvrmavq
    davdalmqkafnsssfnsntfltrllvhmgllksedkvkaianlygplmalnhmvqqdyf
    pkalaplllafvtkpnsalescsfarhsllqtlykv
    

  • Chain 'D':
    No sequence available.