PDB entry 1yv1
View 1yv1 on RCSB PDB site
Description: Fully reduced state of nigerythrin (all ferrous)
Class: oxidoreductase
Keywords: Rubrerythrin, Rubredoxin, Hemerythrin, Electron Transfer, Peroxidase, Diiron center
Deposited on
2005-02-14, released
2005-06-21
The last revision prior to the SCOP 1.75 freeze date was dated
2005-06-21, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: 0.191
AEROSPACI score: 0.76
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nigerythrin
Species: Desulfovibrio vulgaris
Gene: ngr
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1yv1a1, d1yv1a2 - Chain 'B':
Compound: Nigerythrin
Species: Desulfovibrio vulgaris
Gene: ngr
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1yv1b1, d1yv1b2 - Heterogens: FE2, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1yv1A (A:)
mkvraqvptvknatnfnmvadsktsvgstlenlkaaiagetgahakytafakaareqgye
qiarlfeataaaelihigleyalvaemepgyekptvaapsayscdlnlisgangeiyets
dmypafirkaqeegnskavhvftraklaesvhaerylaayndidapdddkfhlcpicgyi
hkgedfekcpicfrpkdtftay
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1yv1B (B:)
mkvraqvptvknatnfnmvadsktsvgstlenlkaaiagetgahakytafakaareqgye
qiarlfeataaaelihigleyalvaemepgyekptvaapsayscdlnlisgangeiyets
dmypafirkaqeegnskavhvftraklaesvhaerylaayndidapdddkfhlcpicgyi
hkgedfekcpicfrpkdtftay