SCOP: Structural Classification of Proteins and ASTRAL

Structural Classification of Proteins and ASTRAL release 1.75B (January 2013)

PDB entry 1yuz

View 1yuz on RCSB PDB site
Description: Partially Reduced State of Nigerythrin
Class: oxidoreductase
Keywords: Rubrythrin, Rubredoxin, Hemerythrin, Electron TRansfer, Diiron Center, OXIDOREDUCTASE
Deposited on 2005-02-14, released 2005-06-21
The last revision prior to the SCOP 1.75B freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: 0.192
AEROSPACI score: 0.69 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Nigerythrin
Species: DESULFOVIBRIO VULGARIS [TaxId:882]
Gene: ngr
Domains in SCOP 1.75B: d1yuza1, d1yuza2
Chain 'B':
Compound: Nigerythrin
Species: DESULFOVIBRIO VULGARIS [TaxId:882]
Gene: ngr
Domains in SCOP 1.75B: d1yuzb1, d1yuzb2
Heterogens: FE, FE2, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1yuzA (A:)
mkvraqvptvknatnfnmvadsktavgstlenlkaaiagetgahakytafakaareqgye
qiarlfeataaaelihigleyalvaemepgyekptvaapsayscdlnlisgangeiyets
dmypafirkaqeegnskavhvftraklaesvhaerylaayndidapdddkfhlcpicgyi
hkgedfekcpicfrpkdtftay

Sequence, based on observed residues (ATOM records): (download)

>1yuzA (A:)
mkvraqvptvknatnfnmvadsktavgstlenlkaaiagetgahakytafakaareqgye
qiarlfeataaaelihigleyalvaemepgyekptvpsayscdlnlisgangeiyetsdm
ypafirkaqeegnskavhvftraklaesvhaerylaayndidapdddkfhlcpicgyihk
gedfekcpicfrpkdtftay

Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)

>1yuzB (B:)
mkvraqvptvknatnfnmvadsktavgstlenlkaaiagetgahakytafakaareqgye
qiarlfeataaaelihigleyalvaemepgyekptvaapsayscdlnlisgangeiyets
dmypafirkaqeegnskavhvftraklaesvhaerylaayndidapdddkfhlcpicgyi
hkgedfekcpicfrpkdtftay