PDB entry 1yup

View 1yup on RCSB PDB site
Description: Reindeer beta-lactoglobulin
Class: transport protein
Keywords: transport protein
Deposited on 2005-02-14, released 2006-02-14
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.239
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: beta-lactoglobulin
    Species: Rangifer tarandus [TaxId:9870]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1yupa1
  • Chain 'B':
    Compound: beta-lactoglobulin
    Species: Rangifer tarandus [TaxId:9870]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1yupb_
  • Chain 'C':
    Compound: beta-lactoglobulin
    Species: Rangifer tarandus [TaxId:9870]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1yupc_
  • Chain 'D':
    Compound: beta-lactoglobulin
    Species: Rangifer tarandus [TaxId:9870]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1yupd_
  • Chain 'E':
    Compound: beta-lactoglobulin
    Species: Rangifer tarandus [TaxId:9870]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1yupe_
  • Chain 'F':
    Compound: beta-lactoglobulin
    Species: Rangifer tarandus [TaxId:9870]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1yupf_
  • Chain 'G':
    Compound: beta-lactoglobulin
    Species: Rangifer tarandus [TaxId:9870]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1yupg_
  • Chain 'H':
    Compound: beta-lactoglobulin
    Species: Rangifer tarandus [TaxId:9870]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1yuph_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1yupA (A:)
iivtqtmkdldvqkvagtwyslamaasdislldaqsaplrvyveelkptpggdleillqk
wengkcaqkkiiaekteipavfkidalnenkvlvldtdykkyllfcmensaepeqslacq
clvrtpevddeamekfdkalkalpmhirlsfnptqleeqcrv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1yupB (B:)
iivtqtmkdldvqkvagtwyslamaasdislldaqsaplrvyveelkptpggdleillqk
wengkcaqkkiiaekteipavfkidalnenkvlvldtdykkyllfcmensaepeqslacq
clvrtpevddeamekfdkalkalpmhirlsfnptqleeqcrv

    Sequence, based on observed residues (ATOM records): (download) 
    >1yupB (B:)
vtqtmkdldvqkvagtwyslamaasdislldaqsaplrvyveelkptpggdleillqkwe
ngkcaqkkiiaekteipavfkidalnenkvlvldtdykkyllfcmensaepeqslacqcl
vrtpevddeamekfdkalkalpmhirlsfnptqleeqc

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1yupC (C:)
iivtqtmkdldvqkvagtwyslamaasdislldaqsaplrvyveelkptpggdleillqk
wengkcaqkkiiaekteipavfkidalnenkvlvldtdykkyllfcmensaepeqslacq
clvrtpevddeamekfdkalkalpmhirlsfnptqleeqcrv

    Sequence, based on observed residues (ATOM records): (download) 
    >1yupC (C:)
vtqtmkdldvqkvagtwyslamaasdislldaqsaplrvyveelkptpggdleillqkwe
ngkcaqkkiiaekteipavfkidalnenkvlvldtdykkyllfcmensaepeqslacqcl
vrtpevddeamekfdkalkalpmhirlsfnptqleeqcrv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1yupD (D:)
iivtqtmkdldvqkvagtwyslamaasdislldaqsaplrvyveelkptpggdleillqk
wengkcaqkkiiaekteipavfkidalnenkvlvldtdykkyllfcmensaepeqslacq
clvrtpevddeamekfdkalkalpmhirlsfnptqleeqcrv

    Sequence, based on observed residues (ATOM records): (download) 
    >1yupD (D:)
vtqtmkdldvqkvagtwyslamaasdislldaqsaplrvyveelkptpggdleillqkwe
ngkcaqkkiiaekteipavfkidalnenkvlvldtdykkyllfcmensaepeqslacqcl
vrtpevddeamekfdkalkalpmhirlsfnptqleeqc

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1yupE (E:)
iivtqtmkdldvqkvagtwyslamaasdislldaqsaplrvyveelkptpggdleillqk
wengkcaqkkiiaekteipavfkidalnenkvlvldtdykkyllfcmensaepeqslacq
clvrtpevddeamekfdkalkalpmhirlsfnptqleeqcrv

    Sequence, based on observed residues (ATOM records): (download) 
    >1yupE (E:)
dldvqkvagtwyslamaasdislldaqsaplrvyveelkptpggdleillqkwengkcaq
kkiiaekteipavfkidalnenkvlvldtdykkyllfcmensaepeqslacqclvrtpev
ddeamekfdkalkalpmhirlsfnptqleeqcrv

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1yupF (F:)
iivtqtmkdldvqkvagtwyslamaasdislldaqsaplrvyveelkptpggdleillqk
wengkcaqkkiiaekteipavfkidalnenkvlvldtdykkyllfcmensaepeqslacq
clvrtpevddeamekfdkalkalpmhirlsfnptqleeqcrv

    Sequence, based on observed residues (ATOM records): (download) 
    >1yupF (F:)
ivtqtmkdldvqkvagtwyslamaasdislldaqsaplrvyveelkptpggdleillqkw
engkcaqkkiiaekteipavfkidalnenkvlvldtdykkyllfcmensaepeqslacqc
lvrtpevddeamekfdkalkalpmhirlsfnptqleeqc

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1yupG (G:)
iivtqtmkdldvqkvagtwyslamaasdislldaqsaplrvyveelkptpggdleillqk
wengkcaqkkiiaekteipavfkidalnenkvlvldtdykkyllfcmensaepeqslacq
clvrtpevddeamekfdkalkalpmhirlsfnptqleeqcrv

    Sequence, based on observed residues (ATOM records): (download) 
    >1yupG (G:)
vtqtmkdldvqkvagtwyslamaasdislldaqsaplrvyveelkptpggdleillqkwe
ngkcaqkkiiaekteipavfkidalnenkvlvldtdykkyllfcmensaepeqslacqcl
vrtpevddeamekfdkalkalpmhirlsfnptqleeqcrv

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1yupH (H:)
iivtqtmkdldvqkvagtwyslamaasdislldaqsaplrvyveelkptpggdleillqk
wengkcaqkkiiaekteipavfkidalnenkvlvldtdykkyllfcmensaepeqslacq
clvrtpevddeamekfdkalkalpmhirlsfnptqleeqcrv

    Sequence, based on observed residues (ATOM records): (download) 
    >1yupH (H:)
dldvqkvagtwyslamaasdislldaqsaplrvyveelkptpggdleillqkwengkcaq
kkiiaekteipavfkidalnenkvlvldtdykkyllfcmensaepeqslacqclvrtpev
ddeamekfdkalkalpmhirlsfnptqleeqc